Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_F02
         (941 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g47390.1 68415.m05915 expressed protein                             30   1.9  
At5g25510.1 68418.m03035 serine/threonine protein phosphatase 2A...    29   4.5  

>At2g47390.1 68415.m05915 expressed protein
          Length = 961

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -3

Query: 276 IWLFRSRVACACLCAQARRPPELVLAPPGPKTLVPESLT 160
           +W+  S +  + + +    PP+  L P GPKTL  E+ T
Sbjct: 264 VWIDNSTLLVSTIPSSRGEPPKKPLVPSGPKTLSNETKT 302


>At5g25510.1 68418.m03035 serine/threonine protein phosphatase 2A
           (PP2A) regulatory subunit B', putative similar to
           SWISS-PROT:Q28653 serine/threonine protein phosphatase
           2A, 56 kDa regulatory subunit, delta isoform (PP2A, B
           subunit, B' delta isoform, PP2A, B subunit, B56 delta
           isoform, PP2A, B subunit, PR61 delta isoform, PP2A, B
           subunit, R5 delta isoform, PP2A, B subunit, B'-gamma)
           [Oryctolagus cuniculus]; contains Pfam domain, PF01603:
           Protein phosphatase 2A regulatory B subunit (B56 family)
          Length = 500

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 17/36 (47%), Positives = 22/36 (61%)
 Frame = +2

Query: 128 RSFMPPAAXSPVRLSGTSVXGPGGASTNSGGRLAWA 235
           RS   P + SPV+ SGTS  G G   +NSG R++ A
Sbjct: 23  RSSSGPVS-SPVQRSGTSGGGSGPVRSNSGKRMSSA 57


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,328,801
Number of Sequences: 28952
Number of extensions: 198993
Number of successful extensions: 468
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2256303936
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)