Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_F01
         (897 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g31350.1 68417.m04446 expressed protein contains Pfam profile...    30   2.4  
At1g69550.1 68414.m07998 disease resistance protein (TIR-NBS cla...    29   3.2  
At1g65320.1 68414.m07407 CBS domain-containing protein contains ...    28   9.7  

>At4g31350.1 68417.m04446 expressed protein contains Pfam profile
           PF03267: Arabidopsis protein of unknown function, DUF266
          Length = 711

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -3

Query: 409 PDTDPFEGL*RVPISGHSIEFKLVIRVKESSPLHFAS 299
           P T PFE L  +   GH  +F + +   + SP+H +S
Sbjct: 463 PGTLPFEPLWEMFFRGHENKFSVYVHASKKSPVHTSS 499


>At1g69550.1 68414.m07998 disease resistance protein (TIR-NBS
           class), putative domain signature TIR-NBS exists,
           suggestive of a disease resistance protein.
          Length = 703

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = -3

Query: 823 LSXGANLVMFTKVVSLFLGIYDR*VRLISTAHPVCFGPGHR 701
           L    N VM  KV+ +  G+ D+ V+L++    VC GPG R
Sbjct: 350 LGTAQNFVMGKKVLIVLDGV-DQLVQLLAMPKAVCLGPGSR 389


>At1g65320.1 68414.m07407 CBS domain-containing protein contains
           Pfam profile PF00571: CBS domain
          Length = 425

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 18/71 (25%), Positives = 30/71 (42%)
 Frame = +2

Query: 638 IPNTDYAYSDVLGRCYKMYLTPMTWSEAYRVCSADQSYLAIINTKEEADHFSEHDEISSX 817
           +P T  +   ++ + Y      +   EA R    D S +A++   E    F    EIS+ 
Sbjct: 209 LPLTSISTLGIINQNYNFIEASLPAIEATRRPLCDPSAIAVLEQTENEQQFKIIGEISAS 268

Query: 818 RQVRXXYLAGA 850
           +  +  YLA A
Sbjct: 269 KLWKCDYLAAA 279


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,801,066
Number of Sequences: 28952
Number of extensions: 389410
Number of successful extensions: 936
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 936
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2110422216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)