Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_E24
         (902 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0289 + 28233327-28233815                                         32   0.72 
12_01_0298 - 2250517-2251235,2251331-2251577,2251615-2252951,225...    31   1.7  
03_05_0661 + 26532732-26532997,26533933-26534073,26535734-26535851     30   2.9  
06_03_0218 + 18219956-18220555                                         29   5.1  
08_02_1006 - 23484861-23485409,23486327-23486488,23486584-23487165     29   6.7  

>01_06_0289 + 28233327-28233815
          Length = 162

 Score = 31.9 bits (69), Expect = 0.72
 Identities = 24/67 (35%), Positives = 25/67 (37%)
 Frame = -3

Query: 879 GQGDKXXXPGGXQDDXTG*GXXVGXNGGFGHTAQLGADDXHRTEIPTAXAMRKRHASRRE 700
           G GD     GG  D   G     G  GG G     G       E       R+RHA RR 
Sbjct: 79  GLGDDDRDGGGLGDGDGGSSGGEGGGGGSGDGEDCGGGFGDGEE-------RRRHARRRS 131

Query: 699 KGGQVSG 679
           KGG  SG
Sbjct: 132 KGGGGSG 138


>12_01_0298 -
           2250517-2251235,2251331-2251577,2251615-2252951,
           2256029-2256188
          Length = 820

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
 Frame = -3

Query: 828 G*GXXVGXNGGFGHTAQLGAD-DXHRTEIPTAXAMRKRHASRREKGGQVSGKRQXRNRRA 652
           G G   G  G  G  +  G D D  R+++ +    R+R   RR +  Q   +RQ  NRR 
Sbjct: 426 GKGVQPGRPGSAGMRSDDGGDSDGARSKLVSLRGGRRRGRRRRRRRRQRQQRRQEGNRRR 485

Query: 651 XEGAS 637
            +G +
Sbjct: 486 LDGGA 490


>03_05_0661 + 26532732-26532997,26533933-26534073,26535734-26535851
          Length = 174

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 22/86 (25%), Positives = 43/86 (50%)
 Frame = -3

Query: 792 GHTAQLGADDXHRTEIPTAXAMRKRHASRREKGGQVSGKRQXRNRRAXEGASRGKRLVSL 613
           GH   LG ++  + E+P A       + RR +G +++  ++ +N R  EG  RG +   +
Sbjct: 70  GHYLSLGCEENGQHEVPPA---HFAVSDRRNRGEKIARAKKQKNPRG-EG-ERGDQEFRM 124

Query: 612 *SCRVSPPLT*ASIFVXLVQGGGAYG 535
              R+S PL   ++ + ++ G   +G
Sbjct: 125 ---RLSFPLVAGAVVIGVISGNVIFG 147


>06_03_0218 + 18219956-18220555
          Length = 199

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 21/63 (33%), Positives = 26/63 (41%)
 Frame = -3

Query: 804 NGGFGHTAQLGADDXHRTEIPTAXAMRKRHASRREKGGQVSGKRQXRNRRAXEGASRGKR 625
           NGG     ++ A    +T  P     R R   R E  G  + KR+ R R    G  RGKR
Sbjct: 81  NGGLTEGEEVAARPREKTARPDGA--RARRERRLEAAG--AEKREGRRRGGSSGGLRGKR 136

Query: 624 LVS 616
             S
Sbjct: 137 RAS 139


>08_02_1006 - 23484861-23485409,23486327-23486488,23486584-23487165
          Length = 430

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -3

Query: 639 SRGKRLVSL*SCRVSPPLT*ASIFVXLVQGGGAYGKTPAT 520
           SRGK L+S  + R  PP   + + V  + GGG  G  P T
Sbjct: 25  SRGKSLLSPSTPRSPPPSYGSIVTVLSIDGGGVRGIIPGT 64


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,704,781
Number of Sequences: 37544
Number of extensions: 301867
Number of successful extensions: 826
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 824
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2553813320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)