Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_E24
         (902 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi...    31   0.79 
At4g22470.1 68417.m03245 protease inhibitor/seed storage/lipid t...    28   7.4  
At3g50370.1 68416.m05508 expressed protein                             28   9.7  
At1g20130.1 68414.m02518 family II extracellular lipase, putativ...    28   9.7  

>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
           PF00076 RNA recognition motif
          Length = 636

 Score = 31.5 bits (68), Expect = 0.79
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = -3

Query: 744 PTAXAMRKRHASRREKGGQVSGKRQXRNRRAXEGASRGK 628
           P   A R RH+ R  +GG+ S  R  R R +  GA RG+
Sbjct: 571 PARGAPRGRHSDRAPRGGRFS-DRAPRGRHSDRGAPRGR 608


>At4g22470.1 68417.m03245 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein similar to
           hydroxyproline-rich glycoprotein DZ-HRGP from Volvox
           carteri f. nagariensis GP|6523547; contains Pfam profile
           PF00234 Protease inhibitor/seed storage/LTP family
          Length = 375

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 15/43 (34%), Positives = 16/43 (37%)
 Frame = +2

Query: 758 CXSSAPSWAVCPNPPFXPTXXPYPVXSS*XPPGXXXLSPWPXA 886
           C    P     P PP  PT  P P  +   PP     SP P A
Sbjct: 40  CNPGPPPPQPDPQPPTPPTFQPAPPANDQPPPPPQSTSPPPVA 82


>At3g50370.1 68416.m05508 expressed protein
          Length = 2179

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +3

Query: 543 LRPPERASQKSTLKSEVAKPDRTIKIPGVS 632
           L PP+ + QK++ +SEV  P  +  I G++
Sbjct: 794 LPPPQESRQKTSFRSEVEHPGPSTSIGGIN 823


>At1g20130.1 68414.m02518 family II extracellular lipase, putative
           contains Pfam profile PF00657: GDSL-like
           Lipase/Acylhydrolase; similar to EXL3 (PMID:11431566)
          Length = 1006

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = +2

Query: 770 APSWAVCPNPPFXPTXXPYPVXSS*XPP 853
           AP    CP+PP  P   P PV     PP
Sbjct: 92  APKPVPCPSPPKPPAPTPKPVPPHGPPP 119


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,156,354
Number of Sequences: 28952
Number of extensions: 208851
Number of successful extensions: 478
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 476
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2129873112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)