Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_E21
         (924 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0686 - 30900748-30902167,30903442-30904742                       33   0.42 
11_04_0009 - 12132781-12133272                                         29   6.9  

>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 32.7 bits (71), Expect = 0.42
 Identities = 14/33 (42%), Positives = 14/33 (42%)
 Frame = +2

Query: 590 PXXXGPGXPPXXXGXWXPPPXXXXXXXFGPPPP 688
           P   GP  PP   G   PPP        GPPPP
Sbjct: 348 PPAKGPPPPPPPKGPSPPPPPPPGGKKGGPPPP 380


>11_04_0009 - 12132781-12133272
          Length = 163

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 226 RXSTWAREQRWSXSKPAPERRRRIGSLR 143
           R   W RE+R S  +  P +RRR+G  R
Sbjct: 108 RGEAWRRERRDSKIESRPSQRRRVGGRR 135


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,496,866
Number of Sequences: 37544
Number of extensions: 211486
Number of successful extensions: 351
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 345
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2635816500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)