Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_E20
         (888 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0632 - 19121654-19121783,19121910-19122091,19122752-19122841    170   1e-42
08_02_1315 + 26083856-26083945,26084093-26084226,26084753-260848...   154   1e-37
09_04_0633 - 19123930-19124009,19124240-19124344,19124453-191245...   151   7e-37
09_04_0630 + 19104678-19105463,19106169-19106348,19107775-191078...   110   1e-24
02_05_0718 + 31203358-31203717,31203826-31204011                       30   2.1  

>09_04_0632 - 19121654-19121783,19121910-19122091,19122752-19122841
          Length = 133

 Score =  170 bits (413), Expect = 1e-42
 Identities = 84/130 (64%), Positives = 96/130 (73%)
 Frame = +3

Query: 120 PVXRPTIVKKRPQRFXXHQSXRXAKLKRXWRKPXGXDNXVRRRFKGQYLMPNIGYGSNKK 299
           P+    IVKKR ++F    S R   LK  WR+P G D+ VRR+FKG  LMPNIGYGS+KK
Sbjct: 4   PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKK 63

Query: 300 XRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNA 479
            RH LPN F+K +VHNV ELE+LMM NR YCAEIAH VS+KKRK IVERA QL I VTN 
Sbjct: 64  TRHYLPNKFKKFVVHNVSELELLMMHNRMYCAEIAHNVSTKKRKEIVERAAQLDIVVTNK 123

Query: 480 XARLRSQENE 509
            ARLRSQE+E
Sbjct: 124 LARLRSQEDE 133


>08_02_1315 +
           26083856-26083945,26084093-26084226,26084753-26084819,
           26085011-26085192,26085315-26085444
          Length = 200

 Score =  154 bits (373), Expect = 1e-37
 Identities = 73/101 (72%), Positives = 82/101 (81%)
 Frame = +3

Query: 207 WRKPXGXDNXVRRRFKGQYLMPNIGYGSNKKXRHMLPNGFRKVLVHNVKELEILMMQNRK 386
           WR+P G D+ VRR+FKG  LMPNIGYGS+KK RH LPN F+K +VHNV ELE+LMM NR 
Sbjct: 100 WRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNKFKKFVVHNVSELELLMMHNRT 159

Query: 387 YCAEIAHGVSSKKRKLIVERAQQLSIRVTNAXARLRSQENE 509
           YCAEIAH VS+KKRK IVERA QL I VTN  ARLRSQE+E
Sbjct: 160 YCAEIAHNVSTKKRKEIVERAAQLDIVVTNKLARLRSQEDE 200


>09_04_0633 -
           19123930-19124009,19124240-19124344,19124453-19124543,
           19124647-19124709,19126318-19126368,19126878-19126962,
           19127102-19127283,19128493-19128582
          Length = 248

 Score =  151 bits (366), Expect = 7e-37
 Identities = 73/118 (61%), Positives = 86/118 (72%)
 Frame = +3

Query: 120 PVXRPTIVKKRPQRFXXHQSXRXAKLKRXWRKPXGXDNXVRRRFKGQYLMPNIGYGSNKK 299
           P+    IVKKR ++F    S R   LK  WR+P G D+ VRR+FKG  LMPNIGYGS+KK
Sbjct: 4   PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKK 63

Query: 300 XRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVT 473
            RH LPN F+K +VHNV ELE+LMM NR YCAEIAH VS+KKRK IVERA QL I ++
Sbjct: 64  TRHYLPNKFKKFVVHNVSELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDIVIS 121


>09_04_0630 +
           19104678-19105463,19106169-19106348,19107775-19107864,
           19108777-19108958,19109968-19109974,19111763-19111833,
           19112188-19112224,19112433-19112603
          Length = 507

 Score =  110 bits (265), Expect = 1e-24
 Identities = 52/88 (59%), Positives = 62/88 (70%)
 Frame = +3

Query: 120 PVXRPTIVKKRPQRFXXHQSXRXAKLKRXWRKPXGXDNXVRRRFKGQYLMPNIGYGSNKK 299
           P+    IVKKR ++F    S R   LK  WR+P G D+ VRR+FKG  LMPNIGYGS+KK
Sbjct: 326 PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKK 385

Query: 300 XRHMLPNGFRKVLVHNVKELEILMMQNR 383
            RH LPN F+K +VHNV ELE+LMM NR
Sbjct: 386 TRHYLPNKFKKFVVHNVSELELLMMHNR 413


>02_05_0718 + 31203358-31203717,31203826-31204011
          Length = 181

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 21/75 (28%), Positives = 28/75 (37%), Gaps = 1/75 (1%)
 Frame = -2

Query: 245 PADXVVXTXRFTPXPLKFGXAXRLMPXKALRPLFDDCRPXNRAXSQLGXXXE-KRDREPR 69
           PAD V     + P P   G    L   +AL P  + C P + A S        ++ R P 
Sbjct: 11  PADEVADFDEYDPTPYGGGYDIALTFGRALPPSDEICHPISTASSSSSSYDRPQQGRRPP 70

Query: 68  VTRPHXKGKV*RRPE 24
               H      RRP+
Sbjct: 71  AEETHLSAGHGRRPD 85


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,363,274
Number of Sequences: 37544
Number of extensions: 240465
Number of successful extensions: 619
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)