Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_E20
         (888 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13939-1|CAA74278.1|  134|Drosophila melanogaster ribosomal prot...   209   4e-54
U92431-1|AAB51389.1|  134|Drosophila melanogaster ribosomal prot...   209   4e-54
BT011442-1|AAR99100.1|  147|Drosophila melanogaster RE59709p pro...   209   4e-54
AY070656-1|AAL48127.1|  134|Drosophila melanogaster RH03940p pro...   209   4e-54
AE014297-4527|AAN14211.1|  134|Drosophila melanogaster CG7939-PB...   209   4e-54
AE014297-4526|AAF57001.1|  134|Drosophila melanogaster CG7939-PA...   209   4e-54
AE014297-4525|AAN14210.1|  147|Drosophila melanogaster CG7939-PC...   209   4e-54
X00848-1|CAA25404.1|  133|Drosophila melanogaster ribosomal prot...   152   5e-37
BT030157-1|ABN49296.1|  126|Drosophila melanogaster IP17707p pro...    56   9e-08

>Y13939-1|CAA74278.1|  134|Drosophila melanogaster ribosomal protein
           49 protein.
          Length = 134

 Score =  209 bits (510), Expect = 4e-54
 Identities = 97/130 (74%), Positives = 106/130 (81%)
 Frame = +3

Query: 120 PVXRPTIVKKRPQRFXXHQSXRXAKLKRXWRKPXGXDNXVRRRFKGQYLMPNIGYGSNKK 299
           P  RP IVKKR + F  HQS R AKL   WRKP G DN VRRRFKGQYLMPNIGYGSNK+
Sbjct: 5   PAYRPKIVKKRTKHFIRHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYGSNKR 64

Query: 300 XRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNA 479
            RHMLP GF+K LVHNV+ELE+L+MQNR YC EIAHGVSSKKRK IVERA+QLS+R+TN 
Sbjct: 65  TRHMLPTGFKKFLVHNVRELEVLLMQNRVYCGEIAHGVSSKKRKEIVERAKQLSVRLTNP 124

Query: 480 XARLRSQENE 509
             RLRSQENE
Sbjct: 125 NGRLRSQENE 134


>U92431-1|AAB51389.1|  134|Drosophila melanogaster ribosomal protein
           49 protein.
          Length = 134

 Score =  209 bits (510), Expect = 4e-54
 Identities = 97/130 (74%), Positives = 106/130 (81%)
 Frame = +3

Query: 120 PVXRPTIVKKRPQRFXXHQSXRXAKLKRXWRKPXGXDNXVRRRFKGQYLMPNIGYGSNKK 299
           P  RP IVKKR + F  HQS R AKL   WRKP G DN VRRRFKGQYLMPNIGYGSNK+
Sbjct: 5   PAYRPKIVKKRTKHFIRHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYGSNKR 64

Query: 300 XRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNA 479
            RHMLP GF+K LVHNV+ELE+L+MQNR YC EIAHGVSSKKRK IVERA+QLS+R+TN 
Sbjct: 65  TRHMLPTGFKKFLVHNVRELEVLLMQNRVYCGEIAHGVSSKKRKEIVERAKQLSVRLTNP 124

Query: 480 XARLRSQENE 509
             RLRSQENE
Sbjct: 125 NGRLRSQENE 134


>BT011442-1|AAR99100.1|  147|Drosophila melanogaster RE59709p
           protein.
          Length = 147

 Score =  209 bits (510), Expect = 4e-54
 Identities = 97/130 (74%), Positives = 106/130 (81%)
 Frame = +3

Query: 120 PVXRPTIVKKRPQRFXXHQSXRXAKLKRXWRKPXGXDNXVRRRFKGQYLMPNIGYGSNKK 299
           P  RP IVKKR + F  HQS R AKL   WRKP G DN VRRRFKGQYLMPNIGYGSNK+
Sbjct: 18  PAYRPKIVKKRTKHFIRHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYGSNKR 77

Query: 300 XRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNA 479
            RHMLP GF+K LVHNV+ELE+L+MQNR YC EIAHGVSSKKRK IVERA+QLS+R+TN 
Sbjct: 78  TRHMLPTGFKKFLVHNVRELEVLLMQNRVYCGEIAHGVSSKKRKEIVERAKQLSVRLTNP 137

Query: 480 XARLRSQENE 509
             RLRSQENE
Sbjct: 138 NGRLRSQENE 147


>AY070656-1|AAL48127.1|  134|Drosophila melanogaster RH03940p
           protein.
          Length = 134

 Score =  209 bits (510), Expect = 4e-54
 Identities = 97/130 (74%), Positives = 106/130 (81%)
 Frame = +3

Query: 120 PVXRPTIVKKRPQRFXXHQSXRXAKLKRXWRKPXGXDNXVRRRFKGQYLMPNIGYGSNKK 299
           P  RP IVKKR + F  HQS R AKL   WRKP G DN VRRRFKGQYLMPNIGYGSNK+
Sbjct: 5   PAYRPKIVKKRTKHFIRHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYGSNKR 64

Query: 300 XRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNA 479
            RHMLP GF+K LVHNV+ELE+L+MQNR YC EIAHGVSSKKRK IVERA+QLS+R+TN 
Sbjct: 65  TRHMLPTGFKKFLVHNVRELEVLLMQNRVYCGEIAHGVSSKKRKEIVERAKQLSVRLTNP 124

Query: 480 XARLRSQENE 509
             RLRSQENE
Sbjct: 125 NGRLRSQENE 134


>AE014297-4527|AAN14211.1|  134|Drosophila melanogaster CG7939-PB,
           isoform B protein.
          Length = 134

 Score =  209 bits (510), Expect = 4e-54
 Identities = 97/130 (74%), Positives = 106/130 (81%)
 Frame = +3

Query: 120 PVXRPTIVKKRPQRFXXHQSXRXAKLKRXWRKPXGXDNXVRRRFKGQYLMPNIGYGSNKK 299
           P  RP IVKKR + F  HQS R AKL   WRKP G DN VRRRFKGQYLMPNIGYGSNK+
Sbjct: 5   PAYRPKIVKKRTKHFIRHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYGSNKR 64

Query: 300 XRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNA 479
            RHMLP GF+K LVHNV+ELE+L+MQNR YC EIAHGVSSKKRK IVERA+QLS+R+TN 
Sbjct: 65  TRHMLPTGFKKFLVHNVRELEVLLMQNRVYCGEIAHGVSSKKRKEIVERAKQLSVRLTNP 124

Query: 480 XARLRSQENE 509
             RLRSQENE
Sbjct: 125 NGRLRSQENE 134


>AE014297-4526|AAF57001.1|  134|Drosophila melanogaster CG7939-PA,
           isoform A protein.
          Length = 134

 Score =  209 bits (510), Expect = 4e-54
 Identities = 97/130 (74%), Positives = 106/130 (81%)
 Frame = +3

Query: 120 PVXRPTIVKKRPQRFXXHQSXRXAKLKRXWRKPXGXDNXVRRRFKGQYLMPNIGYGSNKK 299
           P  RP IVKKR + F  HQS R AKL   WRKP G DN VRRRFKGQYLMPNIGYGSNK+
Sbjct: 5   PAYRPKIVKKRTKHFIRHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYGSNKR 64

Query: 300 XRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNA 479
            RHMLP GF+K LVHNV+ELE+L+MQNR YC EIAHGVSSKKRK IVERA+QLS+R+TN 
Sbjct: 65  TRHMLPTGFKKFLVHNVRELEVLLMQNRVYCGEIAHGVSSKKRKEIVERAKQLSVRLTNP 124

Query: 480 XARLRSQENE 509
             RLRSQENE
Sbjct: 125 NGRLRSQENE 134


>AE014297-4525|AAN14210.1|  147|Drosophila melanogaster CG7939-PC,
           isoform C protein.
          Length = 147

 Score =  209 bits (510), Expect = 4e-54
 Identities = 97/130 (74%), Positives = 106/130 (81%)
 Frame = +3

Query: 120 PVXRPTIVKKRPQRFXXHQSXRXAKLKRXWRKPXGXDNXVRRRFKGQYLMPNIGYGSNKK 299
           P  RP IVKKR + F  HQS R AKL   WRKP G DN VRRRFKGQYLMPNIGYGSNK+
Sbjct: 18  PAYRPKIVKKRTKHFIRHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYGSNKR 77

Query: 300 XRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNA 479
            RHMLP GF+K LVHNV+ELE+L+MQNR YC EIAHGVSSKKRK IVERA+QLS+R+TN 
Sbjct: 78  TRHMLPTGFKKFLVHNVRELEVLLMQNRVYCGEIAHGVSSKKRKEIVERAKQLSVRLTNP 137

Query: 480 XARLRSQENE 509
             RLRSQENE
Sbjct: 138 NGRLRSQENE 147


>X00848-1|CAA25404.1|  133|Drosophila melanogaster ribosomal protein
           49 protein.
          Length = 133

 Score =  152 bits (369), Expect = 5e-37
 Identities = 73/116 (62%), Positives = 85/116 (73%)
 Frame = +3

Query: 120 PVXRPTIVKKRPQRFXXHQSXRXAKLKRXWRKPXGXDNXVRRRFKGQYLMPNIGYGSNKK 299
           P  RP IVKKR + F  HQS R AKL   WRKP G DN V RRFKGQYLMPNIGYGSNK+
Sbjct: 5   PAYRPKIVKKRTKDFIRHQSDRYAKLSHKWRKPKGIDNRVGRRFKGQYLMPNIGYGSNKR 64

Query: 300 XRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIR 467
            RHMLP GF+K LVHNV+ELE+L+MQN +   E+    S  + K I+ERA+QLS+R
Sbjct: 65  TRHMLPTGFKKFLVHNVRELEVLLMQNPRLLREMP-TASPPRSKEIIERAKQLSLR 119


>BT030157-1|ABN49296.1|  126|Drosophila melanogaster IP17707p
           protein.
          Length = 126

 Score = 55.6 bits (128), Expect = 9e-08
 Identities = 35/96 (36%), Positives = 49/96 (51%)
 Frame = +2

Query: 230 QQXPQAVQGSILDAQHWLRFQQEXPSYAPKWIP*GPSSQC*RAGNLDDAKQEVLRRDRSW 409
           QQ    +QG++ DAQH LR +Q  P +A   I   P +Q  RAG    A+  +LRRDR  
Sbjct: 9   QQSASPLQGTVSDAQHRLRIEQAHPPHAAHRIQEVPGAQRARAGGPAHAEPRLLRRDRPR 68

Query: 410 CLFEEAEADRGKSPAAQHQSDECGRSPPLPGE*INI 517
            L +EA+ D     AA     +  RSP    E +++
Sbjct: 69  RLLQEAQGDCRARQAAVGPPHQPQRSPAFSRERVSL 104


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,017,495
Number of Sequences: 53049
Number of extensions: 394678
Number of successful extensions: 882
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 881
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4332305172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)