Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_E20
         (888 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g18100.1 68417.m02692 60S ribosomal protein L32 (RPL32A) ribo...   173   1e-43
At5g46430.2 68418.m05716 60S ribosomal protein L32 (RPL32B)           170   9e-43
At5g46430.1 68418.m05715 60S ribosomal protein L32 (RPL32B)           170   9e-43
At5g51860.1 68418.m06429 MADS-box protein (AGL72) contains Pfam ...    28   9.5  

>At4g18100.1 68417.m02692 60S ribosomal protein L32 (RPL32A)
           ribosomal protein L32, human, PIR1:R5HU32
          Length = 133

 Score =  173 bits (422), Expect = 1e-43
 Identities = 81/130 (62%), Positives = 96/130 (73%)
 Frame = +3

Query: 120 PVXRPTIVKKRPQRFXXHQSXRXAKLKRXWRKPXGXDNXVRRRFKGQYLMPNIGYGSNKK 299
           P+    +VKKR  +F   QS R   +K  WR+P G D+ VRR+FKG  LMPN+GYGS+KK
Sbjct: 4   PLLTKKVVKKRSAKFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGVTLMPNVGYGSDKK 63

Query: 300 XRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNA 479
            RH LPNGF+K +VHN  ELE+LMM NR YCAEIAH VS+KKRK IVERA QL + VTN 
Sbjct: 64  TRHYLPNGFKKFVVHNTSELELLMMHNRTYCAEIAHNVSTKKRKAIVERASQLDVVVTNR 123

Query: 480 XARLRSQENE 509
            ARLRSQE+E
Sbjct: 124 LARLRSQEDE 133


>At5g46430.2 68418.m05716 60S ribosomal protein L32 (RPL32B)
          Length = 133

 Score =  170 bits (414), Expect = 9e-43
 Identities = 78/130 (60%), Positives = 95/130 (73%)
 Frame = +3

Query: 120 PVXRPTIVKKRPQRFXXHQSXRXAKLKRXWRKPXGXDNXVRRRFKGQYLMPNIGYGSNKK 299
           P+    +VKKR  +F   QS R   +K  WR+P G D+ VRR+FKG  LMPN+GYGS+KK
Sbjct: 4   PLLTKKVVKKRSAKFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGVTLMPNVGYGSDKK 63

Query: 300 XRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNA 479
            RH LPNGF+K +VHN  ELE+LMM NR YCAEIAH +S+KKRK IVERA QL + V+N 
Sbjct: 64  TRHYLPNGFKKFIVHNTSELELLMMHNRTYCAEIAHNISTKKRKAIVERASQLDVVVSNK 123

Query: 480 XARLRSQENE 509
             RLRSQE+E
Sbjct: 124 LGRLRSQEDE 133


>At5g46430.1 68418.m05715 60S ribosomal protein L32 (RPL32B)
          Length = 133

 Score =  170 bits (414), Expect = 9e-43
 Identities = 78/130 (60%), Positives = 95/130 (73%)
 Frame = +3

Query: 120 PVXRPTIVKKRPQRFXXHQSXRXAKLKRXWRKPXGXDNXVRRRFKGQYLMPNIGYGSNKK 299
           P+    +VKKR  +F   QS R   +K  WR+P G D+ VRR+FKG  LMPN+GYGS+KK
Sbjct: 4   PLLTKKVVKKRSAKFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGVTLMPNVGYGSDKK 63

Query: 300 XRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNA 479
            RH LPNGF+K +VHN  ELE+LMM NR YCAEIAH +S+KKRK IVERA QL + V+N 
Sbjct: 64  TRHYLPNGFKKFIVHNTSELELLMMHNRTYCAEIAHNISTKKRKAIVERASQLDVVVSNK 123

Query: 480 XARLRSQENE 509
             RLRSQE+E
Sbjct: 124 LGRLRSQEDE 133


>At5g51860.1 68418.m06429 MADS-box protein (AGL72) contains Pfam
           profile PF00319: SRF-type transcription factor
           (DNA-binding and dimerisation domain);
          Length = 211

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 17/61 (27%), Positives = 29/61 (47%)
 Frame = +3

Query: 321 GFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAXARLRSQ 500
           G +K +V  VK++E+L + NRK   +     S K+   I  + ++    V    A+L   
Sbjct: 90  GLKKEMVTMVKKIEVLEVHNRKMMGQSLDSCSVKELSEIATQIEKSLHMVRLRKAKLYED 149

Query: 501 E 503
           E
Sbjct: 150 E 150


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,762,252
Number of Sequences: 28952
Number of extensions: 179413
Number of successful extensions: 396
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 396
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2081245872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)