Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_E19
         (900 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    29   0.68 
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    29   0.90 
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    28   1.6  
SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch...    26   6.3  
SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase Pl...    26   8.4  

>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 29.5 bits (63), Expect = 0.68
 Identities = 17/50 (34%), Positives = 29/50 (58%)
 Frame = +3

Query: 153 ATNLLTTARTSLILPKTTTLMETATNLSTTVXITWTVPKADLTSSLPLSL 302
           A+ L +++ T+ + P  +T  ET +  ST+   T T+  +  TSS P+SL
Sbjct: 234 ASTLESSSLTNTVSPTESTFYETKS--STSSVPTQTIDSSSFTSSTPVSL 281


>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 29.1 bits (62), Expect = 0.90
 Identities = 16/55 (29%), Positives = 29/55 (52%)
 Frame = +3

Query: 135 PTLKETATNLLTTARTSLILPKTTTLMETATNLSTTVXITWTVPKADLTSSLPLS 299
           PT++ T T ++ T  T   + +TTT+      + T +  T T P  + T+ LP++
Sbjct: 102 PTVETTTTPMVETT-TITPMVETTTITPMVEAMITLMEETMTTPMEETTTILPMA 155


>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 557

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
 Frame = +2

Query: 200 DYNPNG-NGYEPIDNGAYYVDRPQG---RPYFKPTPFPG 304
           DYN N  N Y PI N  Y+++   G    PYF     PG
Sbjct: 119 DYNNNRKNFYPPIQNSTYFINATGGIDSMPYFGLNNAPG 157


>SPAC29B12.10c |||OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
 Frame = +3

Query: 120 LCWLWPTLKETATNLLTTARTSL-ILPKTTTLMETATNLSTTVXITWTV 263
           LCW+WP  K    N L    + L ILP T    +   N +      W +
Sbjct: 361 LCWIWP--KNRVVNQLFGYNSGLGILPLTFDWQQVVYNSNPLASPWWVI 407


>SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase
           Plh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 623

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 197 KDYNPNGNGYEPIDNGAYYVDRPQGRP 277
           K Y  +G G +P + G YY + P+G+P
Sbjct: 479 KIYCVHGVG-KPTERGYYYTNNPEGQP 504


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,618,604
Number of Sequences: 5004
Number of extensions: 45617
Number of successful extensions: 113
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)