Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_E19
         (900 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g26000.2 68418.m03094 glycosyl hydrolase family 1 protein con...    31   0.79 
At5g26000.1 68418.m03093 glycosyl hydrolase family 1 protein con...    31   0.79 
At3g63460.2 68416.m07146 WD-40 repeat family protein hypothetica...    29   4.2  
At3g63460.1 68416.m07145 WD-40 repeat family protein hypothetica...    29   4.2  
At5g13960.1 68418.m01632 SET domain-containing protein (SUVH4) i...    28   9.7  
At1g07310.1 68414.m00778 C2 domain-containing protein contains s...    28   9.7  

>At5g26000.2 68418.m03094 glycosyl hydrolase family 1 protein
           contains Pfam PF00232 : Glycosyl hydrolase family 1
           domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
           identical to Myrosinase precursor (Sinigrinase)
           (SP:P37702) [Arabidopsis thaliana]
          Length = 456

 Score = 31.5 bits (68), Expect = 0.79
 Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
 Frame = +2

Query: 92  MKFFMIFVLALLAMANAQGNGYEPIDNRPYIVNPPKDYNPNGN---GY-EPIDNGAYYVD 259
           MK  M+  + LLA+A  +G+ +   +N P+  N  K +N +GN   G+   + + AY V+
Sbjct: 1   MKLLMLAFVFLLALATCKGDEFVCEENEPFTCNQTKLFN-SGNFEKGFIFGVASSAYQVE 59

Query: 260 RPQGR 274
             +GR
Sbjct: 60  GGRGR 64


>At5g26000.1 68418.m03093 glycosyl hydrolase family 1 protein
           contains Pfam PF00232 : Glycosyl hydrolase family 1
           domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
           identical to Myrosinase precursor (Sinigrinase)
           (SP:P37702) [Arabidopsis thaliana]
          Length = 541

 Score = 31.5 bits (68), Expect = 0.79
 Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
 Frame = +2

Query: 92  MKFFMIFVLALLAMANAQGNGYEPIDNRPYIVNPPKDYNPNGN---GY-EPIDNGAYYVD 259
           MK  M+  + LLA+A  +G+ +   +N P+  N  K +N +GN   G+   + + AY V+
Sbjct: 1   MKLLMLAFVFLLALATCKGDEFVCEENEPFTCNQTKLFN-SGNFEKGFIFGVASSAYQVE 59

Query: 260 RPQGR 274
             +GR
Sbjct: 60  GGRGR 64


>At3g63460.2 68416.m07146 WD-40 repeat family protein hypothetical
           protein contains similarity to ec31p [Oryza sativa]
           gi|13928450|dbj|BAB47154; contains Pfam profile PF00400:
           WD domain, G-beta repeat
          Length = 1102

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 17/57 (29%), Positives = 22/57 (38%)
 Frame = +2

Query: 128 AMANAQGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDRPQGRPYFKPTPF 298
           A  N Q     P +  P    P    NP  N Y+     +YYV +    P  +PT F
Sbjct: 790 ASGNTQPQSTMPYNQEPTQAQPNVLANPYDNQYQQPYTDSYYVPQVSHPPMQQPTMF 846


>At3g63460.1 68416.m07145 WD-40 repeat family protein hypothetical
           protein contains similarity to ec31p [Oryza sativa]
           gi|13928450|dbj|BAB47154; contains Pfam profile PF00400:
           WD domain, G-beta repeat
          Length = 1104

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 17/57 (29%), Positives = 22/57 (38%)
 Frame = +2

Query: 128 AMANAQGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDRPQGRPYFKPTPF 298
           A  N Q     P +  P    P    NP  N Y+     +YYV +    P  +PT F
Sbjct: 792 ASGNTQPQSTMPYNQEPTQAQPNVLANPYDNQYQQPYTDSYYVPQVSHPPMQQPTMF 848


>At5g13960.1 68418.m01632 SET domain-containing protein (SUVH4)
           identical to SUVH4 [Arabidopsis thaliana] GI:13517749;
           contains Pfam profiles PF00856: SET domain, PF05033:
           Pre-SET motif, PF02182: YDG/SRA domain; identical to
           cDNA SUVH4 (SUVH4) GI:13517748
          Length = 624

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 14/23 (60%), Positives = 16/23 (69%)
 Frame = -3

Query: 163 RFVAVSLSVGHSQQSEDENHEEF 95
           R VAV ++ G SQ SEDEN  EF
Sbjct: 514 RDVAVPMNNGVSQSSEDENAPEF 536


>At1g07310.1 68414.m00778 C2 domain-containing protein contains
           similarity to shock protein SRC2 [Glycine max]
           gi|2055230|dbj|BAA19769 ; contains Pfam profile
           PF00168:C2 domain
          Length = 352

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +2

Query: 191 PPKDYNPNGNGYEPIDNGAYYVDRPQGRPYFKPTPFP 301
           PP  + P     +P+D    Y   PQG  Y+ P+P P
Sbjct: 141 PPPQHPPPRPQSQPLD----YYSAPQGNHYYSPSPPP 173


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,382,798
Number of Sequences: 28952
Number of extensions: 285421
Number of successful extensions: 524
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 520
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2120147664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)