Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_E17
         (890 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45456| Best HMM Match : DUF963 (HMM E-Value=0.00083)                33   0.41 
SB_44862| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.72 
SB_43138| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.3e-14)        32   0.72 
SB_35536| Best HMM Match : zf-C2H2 (HMM E-Value=0.0069)                31   1.3  
SB_22653| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.7  
SB_33134| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.7  
SB_3185| Best HMM Match : Sec63 (HMM E-Value=0)                        31   1.7  
SB_17610| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_26831| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  
SB_13046| Best HMM Match : La (HMM E-Value=5e-23)                      29   5.1  
SB_54629| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     29   6.7  
SB_26008| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.7  
SB_22629| Best HMM Match : CDC37 (HMM E-Value=3.7)                     28   8.8  
SB_4910| Best HMM Match : HECT (HMM E-Value=5.8e-33)                   28   8.8  
SB_24913| Best HMM Match : RVT_1 (HMM E-Value=1e-20)                   28   8.8  

>SB_45456| Best HMM Match : DUF963 (HMM E-Value=0.00083)
          Length = 337

 Score = 32.7 bits (71), Expect = 0.41
 Identities = 27/82 (32%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
 Frame = -1

Query: 449 GPCGAPRPCARCSASTVPKPPWPCRSRLRALPWRLLAKALSCCSTDSEPSFQALLKSCAS 270
           G  G P P     +  +P PP  C+S    +P  L+A     C  D  PS    L +C S
Sbjct: 180 GSDGIPSPLVAYGSDGIPSPPVACKS--DGIPSTLVA-----CKFDGIPS---SLVACKS 229

Query: 269 FDLVSELNCC-SKVLWNSLVWC 207
             + S L  C S  + +SLV C
Sbjct: 230 DGITSSLAACESDGITSSLVGC 251



 Score = 29.1 bits (62), Expect = 5.1
 Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 5/52 (9%)
 Frame = -1

Query: 440 GAPRPCARCSASTVPKPPWPCR-----SRLRALPWRLLAKALSCCSTDSEPS 300
           G P P   C    +P PP  C+     S L A  +  +  +L  C +D  PS
Sbjct: 123 GIPSPLVACKFDDIPSPPVACKFDDIPSTLVACEFDGIPSSLVTCESDGIPS 174


>SB_44862| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 438

 Score = 31.9 bits (69), Expect = 0.72
 Identities = 26/118 (22%), Positives = 47/118 (39%), Gaps = 4/118 (3%)
 Frame = -1

Query: 440 GAPRPCARCSASTVPKPPWPCRSRLRALPWRLLAKALSCCSTDSEPSFQALLKSCASFDL 261
           G   PC+RC   + P    P   R +   WR LA ALS  +T     + A   +  +  L
Sbjct: 95  GQNNPCSRCGLLSCPTTTSP-EKRRKTPSWRTLAPALSPSATQPAACYDA--AAVPALHL 151

Query: 260 VSELNCCSKVLWNSLVWCSM--SLKKSGASRRTIAPWARAMQAKR--TTNLAAMMYCR 99
                 C+      ++   +  ++ +  A+ + + P   +M   R   T+    ++CR
Sbjct: 152 GGLFPYCAYTYTYKMIADQLWSAMHELAAAAKRVTPMVSSMDGNRLLETDTPVTVHCR 209


>SB_43138| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.3e-14)
          Length = 1709

 Score = 31.9 bits (69), Expect = 0.72
 Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
 Frame = +3

Query: 459 VEKNATALREKLQAAVQNTVQESQKLAKKV--------SSNVQETNEKLAPKIQAAYDDF 614
           VEK A  L+EK Q  +   V + ++  +K          S ++ETN  L  K ++   + 
Sbjct: 561 VEKKAKELKEKYQGELNEKVNKVERTLRKQYEEDIVKGRSELEETNRTLKEKYESEVSEI 620

Query: 615 AKNTQEVIKKIQEAANAKQ 671
               ++V ++ QE   A+Q
Sbjct: 621 MLQMEQVQQRNQEVFEAQQ 639


>SB_35536| Best HMM Match : zf-C2H2 (HMM E-Value=0.0069)
          Length = 657

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 16/65 (24%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
 Frame = +3

Query: 462 EKNATALREKLQAAVQNTVQ-ESQKLAKKVSSNVQETNEKLAPKIQAAYDDFAKNTQEVI 638
           E+   AL EK +     T+Q E +K  +K+ + ++ET E +  ++++  + + + T+++ 
Sbjct: 225 EEKLNALLEKEKIVEMTTLQLEDEK--EKIKNELEETKELMQAELESQAETYTEQTRKMH 282

Query: 639 KKIQE 653
            ++QE
Sbjct: 283 SELQE 287


>SB_22653| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 737

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +1

Query: 196 KDIEHHTKEFHKTLEQQFNSLTKSKDAQDFSKAWKDGSESVLQQLN 333
           + IEH  +   K  +QQF+S  K+ D  D S   K+  + ++  L+
Sbjct: 468 RSIEHKIQRLEKKFDQQFSSTEKNMDKNDSSLPKKEIFQQIVTDLS 513


>SB_33134| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2208

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 17/61 (27%), Positives = 34/61 (55%)
 Frame = +3

Query: 468  NATALREKLQAAVQNTVQESQKLAKKVSSNVQETNEKLAPKIQAAYDDFAKNTQEVIKKI 647
            +ATA +E+L++AV+   +   KL  K+S+   ET  K A      Y+  +   ++ +K++
Sbjct: 964  DATASKEELESAVEEKAKAETKLKVKISA--LETKLKKAVNETKRYESSSSQLKQQVKEL 1021

Query: 648  Q 650
            +
Sbjct: 1022 E 1022


>SB_3185| Best HMM Match : Sec63 (HMM E-Value=0)
          Length = 2590

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 17/56 (30%), Positives = 25/56 (44%)
 Frame = +3

Query: 462 EKNATALREKLQAAVQNTVQESQKLAKKVSSNVQETNEKLAPKIQAAYDDFAKNTQ 629
           EKN   L E   +A+QNT+Q          + + E     A KI+A   +  K T+
Sbjct: 272 EKNGIFLSEDSYSAMQNTIQSQTSRITHFETRLPEMEADFAAKIEAMEAELQKVTE 327


>SB_17610| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 132

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = -1

Query: 428 PCARCSASTVPKPPWPCRSRLRALPWRLLAKALSCCSTDSEPSFQALL 285
           P +RC   + P    P + R + L WR LA ALS  +T  +    A L
Sbjct: 54  PWSRCGLLSCPTTTSPAKRR-KTLSWRTLAPALSPSATQPDACCDAAL 100


>SB_26831| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 932

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 15/41 (36%), Positives = 25/41 (60%)
 Frame = +3

Query: 534 LAKKVSSNVQETNEKLAPKIQAAYDDFAKNTQEVIKKIQEA 656
           L KK  ++V+    K   ++QAA  D A  TQE+ +K+Q++
Sbjct: 262 LLKKQLTDVKNQLAKSESQLQAAEKDLAFKTQELKEKVQDS 302


>SB_13046| Best HMM Match : La (HMM E-Value=5e-23)
          Length = 442

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 16/56 (28%), Positives = 27/56 (48%)
 Frame = +3

Query: 480 LREKLQAAVQNTVQESQKLAKKVSSNVQETNEKLAPKIQAAYDDFAKNTQEVIKKI 647
           L+E+ ++  +  +Q+ +K  K+ S   Q+T    APK + A       TQ    KI
Sbjct: 340 LKEEYKSLQRQAMQDLKKQLKQTSEAQQQTETNSAPKAKPAKPSVPSPTQTAPNKI 395


>SB_54629| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 1296

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 18/74 (24%), Positives = 38/74 (51%)
 Frame = +3

Query: 474 TALREKLQAAVQNTVQESQKLAKKVSSNVQETNEKLAPKIQAAYDDFAKNTQEVIKKIQE 653
           TA + K ++      Q+ ++ A+KV S  QET+  +       +DD   +++ +I +  +
Sbjct: 362 TAKKRKKRSKWIGRRQKVKRRARKVPSGCQETSSSIINGNDEEFDDENMHSETIITE-NQ 420

Query: 654 AANAKQ*ASILNSH 695
             N +  +SI+N +
Sbjct: 421 TINEETSSSIINGN 434


>SB_26008| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 487

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 20/67 (29%), Positives = 35/67 (52%)
 Frame = +3

Query: 471 ATALREKLQAAVQNTVQESQKLAKKVSSNVQETNEKLAPKIQAAYDDFAKNTQEVIKKIQ 650
           A  +++  QA  + T  E+QKL + +++  QETNE +  K   +    +KNTQ+    + 
Sbjct: 72  AEKIKQLEQALKEKTHNETQKLDRILATCHQETNEVINSK---SISHESKNTQKRSPTLT 128

Query: 651 EAANAKQ 671
              + KQ
Sbjct: 129 MTEHCKQ 135


>SB_22629| Best HMM Match : CDC37 (HMM E-Value=3.7)
          Length = 504

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
 Frame = +3

Query: 462 EKNATALREKLQAAVQNTVQESQKLAKKVSSNVQET-NEKLAPKIQAAYDDFAKNTQEVI 638
           E+    L EKL     NT    Q  A      +Q T N  L PK     D F +N +E+ 
Sbjct: 89  ERVTKELEEKLDTLAFNTEDIEQDWAL-FKDTIQSTCNNFLGPKTHCHQDWFDENNEEIN 147

Query: 639 KKIQE 653
           + I E
Sbjct: 148 RLIDE 152


>SB_4910| Best HMM Match : HECT (HMM E-Value=5.8e-33)
          Length = 958

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = -1

Query: 374 SRLRALPWRLLAKALSCCSTDSEPSFQALLKSCASFDLVSELNCCSKVLWNSL 216
           S L  + W  L + + C + D  PS   L  +C   D +SE + C K LW +L
Sbjct: 420 SALSLITWNELERGI-CGNPDVSPS--VLKSACKYGDDLSESSECIKFLWAAL 469


>SB_24913| Best HMM Match : RVT_1 (HMM E-Value=1e-20)
          Length = 906

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
 Frame = +3

Query: 462 EKNATALREKLQAAVQNTVQESQKLAKKVSSNVQET-NEKLAPKIQAAYDDFAKNTQEVI 638
           E+    L EKL     NT    Q  A      +Q T N  L PK     D F +N +E+ 
Sbjct: 189 ERVTKELEEKLDTLAFNTEDIEQDWAL-FKDTIQSTCNNILGPKTHCHQDWFDENNEEIN 247

Query: 639 KKIQE 653
           + I E
Sbjct: 248 RLIDE 252


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,287,060
Number of Sequences: 59808
Number of extensions: 340750
Number of successful extensions: 1278
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1274
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2550281014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)