Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_E17
(890 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g48160.1 68415.m06031 PWWP domain-containing protein 30 2.4
At1g70920.1 68414.m08183 homeobox-leucine zipper protein, putati... 29 4.1
At3g15670.1 68416.m01986 late embryogenesis abundant protein, pu... 28 7.2
At1g62380.1 68414.m07038 1-aminocyclopropane-1-carboxylate oxida... 28 7.2
At1g23560.1 68414.m02964 expressed protein contains Pfam profile... 28 7.2
At4g11420.1 68417.m01840 eukaryotic translation initiation facto... 28 9.6
At4g03200.1 68417.m00437 expressed protein contains Pfam PF03190... 28 9.6
At3g48550.1 68416.m05301 expressed protein putative zinc-finger ... 28 9.6
At2g01220.2 68415.m00035 expressed protein 28 9.6
At2g01220.1 68415.m00034 expressed protein 28 9.6
At1g11870.1 68414.m01368 seryl-tRNA synthetase, putative / serin... 28 9.6
>At2g48160.1 68415.m06031 PWWP domain-containing protein
Length = 1366
Score = 29.9 bits (64), Expect = 2.4
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Frame = +3
Query: 69 PVRISSALSLSTVHH-GRQVR--SSLRLHRSGPRSDGATRRSRLLQGHRTPHQGVP 227
P+R++ LS ST+H+ G + S ++L S P++DG+ + R H PH P
Sbjct: 1184 PLRMNPPLSGSTMHYQGPESSYISGVQLTNSIPQADGSNFQHRPYPSHPHPHPPPP 1239
>At1g70920.1 68414.m08183 homeobox-leucine zipper protein, putative
/ HD-ZIP transcription factor, putative similar to
homeodomain leucine zipper protein GI:5006851 from
[Oryza sativa]
Length = 206
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 623 HPGGDQEDPGGRQRQAVSVDIELSHLINISFI 718
H D + GGR+R+ + + E SHL+ SFI
Sbjct: 55 HVNEDDSNSGGRRRKKLRLTKEQSHLLEESFI 86
>At3g15670.1 68416.m01986 late embryogenesis abundant protein,
putative / LEA protein, putative similar to SP|P13934
Late embryogenesis abundant protein 76 (LEA 76)
{Brassica napus}; contains Pfam profile PF02987: Late
embryogenesis abundant protein
Length = 225
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/64 (23%), Positives = 25/64 (39%)
Frame = +3
Query: 480 LREKLQAAVQNTVQESQKLAKKVSSNVQETNEKLAPKIQAAYDDFAKNTQEVIKKIQEAA 659
+R+K + T Q +Q +K Q +K + QAA + Q +K + A
Sbjct: 28 MRDKAEEGRDKTSQTAQTAQQKAHETAQSAKDKTSQTAQAAQQKAHETAQSAKEKTSQTA 87
Query: 660 NAKQ 671
Q
Sbjct: 88 QTAQ 91
>At1g62380.1 68414.m07038 1-aminocyclopropane-1-carboxylate oxidase,
putative / ACC oxidase, putative nearly identical to ACC
oxidase (ACC ox1) GI:587086 from [Brassica oleracea]
Length = 320
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +1
Query: 187 DFFKDIEHHTKEFHKTL-EQQFNSLTKSKDAQDFSKAWKD 303
D IE TK+ +KT EQ+FN + KSK + +D
Sbjct: 47 DLMDKIEKMTKDHYKTCQEQKFNDMLKSKGLDNLETEVED 86
>At1g23560.1 68414.m02964 expressed protein contains Pfam profile
PF02713: Domain of unknown function DUF220
Length = 332
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/49 (30%), Positives = 29/49 (59%)
Frame = +3
Query: 504 VQNTVQESQKLAKKVSSNVQETNEKLAPKIQAAYDDFAKNTQEVIKKIQ 650
+ T+QE K K NV+E + K KI+ AY++ ++ +++ K++Q
Sbjct: 34 MNQTIQEPLKAEFKRLRNVKELSLKSVSKIETAYEEH-RDEEKLEKQLQ 81
>At4g11420.1 68417.m01840 eukaryotic translation initiation factor 3
subunit 10 / eIF-3 theta / eIF3a (TIF3A1) identical to
eukaryotic translation initiation factor 3 subunit 10
(eIF-3 theta) (Eukaryotic translation initiation factor
3 large subunit) (eIF3a) (p114). [Arabidopsis thaliana]
SWISS-PROT:Q9LD55
Length = 987
Score = 27.9 bits (59), Expect = 9.6
Identities = 19/59 (32%), Positives = 31/59 (52%)
Frame = +3
Query: 477 ALREKLQAAVQNTVQESQKLAKKVSSNVQETNEKLAPKIQAAYDDFAKNTQEVIKKIQE 653
AL E+L+ Q ++ QKLAK + + E+ AP I+AAY +E ++ Q+
Sbjct: 666 ALTEQLKER-QEMEKKLQKLAKTMDYLERAKREEAAPLIEAAYQRRLVEEREFYEREQQ 723
>At4g03200.1 68417.m00437 expressed protein contains Pfam PF03190:
Protein of unknown function, DUF255
Length = 818
Score = 27.9 bits (59), Expect = 9.6
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +2
Query: 524 IPEVSEEGVLERAGD**-ETGAQDPGRLRRLREEHPGGDQEDPGGRQRQAVSVDIELSHL 700
+ E +E L+R G T QDP L R++E+H G +P G A+++ + L+ +
Sbjct: 626 LQETQDELYLDREGGAYFNTEGQDPSVLLRVKEDHDGA---EPSGNSVSAINL-VRLASI 681
Query: 701 I 703
+
Sbjct: 682 V 682
>At3g48550.1 68416.m05301 expressed protein putative zinc-finger
protein - Arabidopsis thaliana,PID:g4406777
Length = 158
Score = 27.9 bits (59), Expect = 9.6
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +3
Query: 21 HYREFLKIFDTPLCCSPVRISSALSLSTVHHGRQVRSSLRLH 146
H++E + P SPVR ++T HH RSS +H
Sbjct: 7 HHKELQLLPSPPSTESPVRKHRPTVITTDHHNNHHRSSSMIH 48
>At2g01220.2 68415.m00035 expressed protein
Length = 388
Score = 27.9 bits (59), Expect = 9.6
Identities = 14/32 (43%), Positives = 15/32 (46%)
Frame = -1
Query: 482 EGGGVLLDVQGGPCGAPRPCARCSASTVPKPP 387
EG LL+V CG PC SA KPP
Sbjct: 227 EGHLKLLEVAMSVCGGGYPCFEISAINADKPP 258
>At2g01220.1 68415.m00034 expressed protein
Length = 387
Score = 27.9 bits (59), Expect = 9.6
Identities = 14/32 (43%), Positives = 15/32 (46%)
Frame = -1
Query: 482 EGGGVLLDVQGGPCGAPRPCARCSASTVPKPP 387
EG LL+V CG PC SA KPP
Sbjct: 226 EGHLKLLEVAMSVCGGGYPCFEISAINADKPP 257
>At1g11870.1 68414.m01368 seryl-tRNA synthetase, putative /
serine--tRNA ligase, putative similar to PIR|T03949
serine--tRNA ligase (EC 6.1.1.11) serS {Zea mays};
contains Pfam profiles PF00587: tRNA synthetase class II
core domain (G, H, P, S and T), PF02403: Seryl-tRNA
synthetase N-terminal domain
Length = 512
Score = 27.9 bits (59), Expect = 9.6
Identities = 26/119 (21%), Positives = 50/119 (42%), Gaps = 3/119 (2%)
Frame = +3
Query: 306 LRVRAATAQRLRQESPGXRSETRTARPRRLWNXXXXXXXXXXXXXXXXXLXVEKNATALR 485
L VRA +A Q+ P ++ +ARP LW +N+ A
Sbjct: 45 LLVRAFSASAAVQDIPATQTSDSSARP--LWKAAIDFKWIRDNKEAVEINIRNRNSNANL 102
Query: 486 EKLQAAVQNTV---QESQKLAKKVSSNVQETNEKLAPKIQAAYDDFAKNTQEVIKKIQE 653
E + +N V +E ++L ++ ++ ++ KL P + + KN +E + ++E
Sbjct: 103 EAVLQLYENMVNLQKEVERLREERNNVAKKMKGKLEPSERERLVEEGKNLKESLVTLEE 161
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,468,953
Number of Sequences: 28952
Number of extensions: 230898
Number of successful extensions: 951
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 951
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2090971320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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