Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_E16
         (915 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    32   0.099
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   1.6  
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa...    28   2.1  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   8.6  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 32.3 bits (70), Expect = 0.099
 Identities = 23/69 (33%), Positives = 24/69 (34%)
 Frame = -1

Query: 891 GGGAXGKXPXTXPFXGVGPFXGPXGXXGFXXGXPXXWGKXXXXXGXXGXGXPXPXXRGXG 712
           GGG+ G  P    F G G F G     G   G     G      G  G G   P   G G
Sbjct: 194 GGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGG---PGGFGGG 250

Query: 711 XXGGGNGRG 685
             G G G G
Sbjct: 251 LGGFGGGPG 259



 Score = 27.9 bits (59), Expect = 2.1
 Identities = 23/66 (34%), Positives = 23/66 (34%)
 Frame = -1

Query: 840 GPFXGPXGXXGFXXGXPXXWGKXXXXXGXXGXGXPXPXXRGXGXXGGGNGRGPXXXTAFP 661
           GP  GP G  GF  G     G      G  G G P     G G  GGG G        F 
Sbjct: 199 GPPPGPGGFGGF--GGFGGEGHHHGGHGGFGGG-PGGFEGGPGGFGGGPGGFGGGLGGFG 255

Query: 660 RGGGXF 643
            G G F
Sbjct: 256 GGPGGF 261


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +1

Query: 652 PPPGKGGXXXGPPPVSPPXXS 714
           PPPG  G    PPP  PP  S
Sbjct: 766 PPPGVAGAGPPPPPPPPPAVS 786



 Score = 26.6 bits (56), Expect = 4.9
 Identities = 14/50 (28%), Positives = 14/50 (28%)
 Frame = +2

Query: 743 PXPXXPXXXXXXPQXXGXPXXXPFXPXGPXXGPTPXXGXVXGXXPXAPPP 892
           P P  P      P     P   P    G    P P  G      P  PPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781



 Score = 26.6 bits (56), Expect = 4.9
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +1

Query: 652 PPPGKGGXXXGPPPVSPP 705
           PPP  G    GPPP  PP
Sbjct: 764 PPPPPGVAGAGPPPPPPP 781


>SPCC584.04 |sup35|erf3|translation release factor eRF3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -3

Query: 127 FEDDKYFNRFTVRLPCTSVRQNKKTKIL 44
           FED +Y  RFT+R   T+V   K  KIL
Sbjct: 634 FEDYQYMGRFTLRDQGTTVAVGKVVKIL 661


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 13/36 (36%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
 Frame = +1

Query: 655  PPGKGGXXXGPPPVS-PPXXSXPPXXRXXXXXSXPP 759
            PP        PPP+S PP  S PP          PP
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,947,762
Number of Sequences: 5004
Number of extensions: 22988
Number of successful extensions: 75
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)