Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_E16
(915 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 40 0.003
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 40 0.003
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 40 0.003
U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical p... 33 0.38
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 33 0.38
U80023-1|AAG24037.1| 180|Caenorhabditis elegans Hypothetical pr... 32 0.50
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 32 0.66
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 32 0.66
U50312-1|AAA92318.1| 285|Caenorhabditis elegans Hypothetical pr... 31 0.87
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr... 31 1.1
AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical... 31 1.1
U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical pr... 30 2.0
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 30 2.7
AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf famil... 30 2.7
AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical... 30 2.7
AL033514-8|CAA22097.2| 715|Caenorhabditis elegans Hypothetical ... 30 2.7
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 30 2.7
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 30 2.7
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 3.5
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 3.5
AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical... 29 3.5
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 29 4.6
Z68008-5|CAD91696.1| 1160|Caenorhabditis elegans Hypothetical pr... 29 4.6
U50310-5|AAA92541.1| 318|Caenorhabditis elegans Ground-like (gr... 24 5.6
U88309-2|AAB42334.1| 211|Caenorhabditis elegans Hypothetical pr... 29 6.1
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 29 6.1
AF000299-1|AAC47980.1| 210|Caenorhabditis elegans Hypothetical ... 29 6.1
Z70312-3|CAA94385.1| 172|Caenorhabditis elegans Hypothetical pr... 28 8.1
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 28 8.1
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 28 8.1
AF098501-3|AAM69106.1| 275|Caenorhabditis elegans Hypothetical ... 28 8.1
AF098501-2|AAM69105.1| 298|Caenorhabditis elegans Hypothetical ... 28 8.1
AF098501-1|AAC67404.2| 548|Caenorhabditis elegans Hypothetical ... 28 8.1
AF039052-9|AAF98625.1| 302|Caenorhabditis elegans Hypothetical ... 28 8.1
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 28 8.1
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 28 8.1
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 28 8.1
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 28 8.1
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 28 8.1
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 39.5 bits (88), Expect = 0.003
Identities = 27/81 (33%), Positives = 27/81 (33%)
Frame = +1
Query: 652 PPPGKGGXXXGPPPVSPPXXSXPPXXRXXXXXSXPPXGGXXFXPXPGXXXGKXXXXXXPX 831
PPPG GPPP PP PP PP GG P G P
Sbjct: 715 PPPGLPPITGGPPP-PPPPGGLPPI--TGGPPPPPPPGG-----LPPISGGPPPPPPPPG 766
Query: 832 KXPXPXKXPGXXXFXXGPXPP 894
P P P F GP PP
Sbjct: 767 GCPPPPPPPPPGGFKGGPPPP 787
Score = 31.9 bits (69), Expect = 0.66
Identities = 24/87 (27%), Positives = 26/87 (29%)
Frame = +1
Query: 652 PPPGKGGXXXGPPPVSPPXXSXPPXXRXXXXXSXPPXGGXXFXPXPGXXXGKXXXXXXPX 831
PPPG G PP PP PP PP GG P P G P
Sbjct: 730 PPPGGLPPITGGPPPPPPPGGLPP-ISGGPPPPPPPPGGCPPPPPPPPPGG---FKGGPP 785
Query: 832 KXPXPXKXPGXXXFXXGPXPPXXLXKI 912
P P PP + K+
Sbjct: 786 PPPPPGMFAPMAPVIPDYLPPKKVPKV 812
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 39.5 bits (88), Expect = 0.003
Identities = 27/81 (33%), Positives = 27/81 (33%)
Frame = +1
Query: 652 PPPGKGGXXXGPPPVSPPXXSXPPXXRXXXXXSXPPXGGXXFXPXPGXXXGKXXXXXXPX 831
PPPG GPPP PP PP PP GG P G P
Sbjct: 715 PPPGLPPITGGPPP-PPPPGGLPPI--TGGPPPPPPPGG-----LPPISGGPPPPPPPPG 766
Query: 832 KXPXPXKXPGXXXFXXGPXPP 894
P P P F GP PP
Sbjct: 767 GCPPPPPPPPPGGFKGGPPPP 787
Score = 31.9 bits (69), Expect = 0.66
Identities = 24/87 (27%), Positives = 26/87 (29%)
Frame = +1
Query: 652 PPPGKGGXXXGPPPVSPPXXSXPPXXRXXXXXSXPPXGGXXFXPXPGXXXGKXXXXXXPX 831
PPPG G PP PP PP PP GG P P G P
Sbjct: 730 PPPGGLPPITGGPPPPPPPGGLPP-ISGGPPPPPPPPGGCPPPPPPPPPGG---FKGGPP 785
Query: 832 KXPXPXKXPGXXXFXXGPXPPXXLXKI 912
P P PP + K+
Sbjct: 786 PPPPPGMFAPMAPVIPDYLPPKKVPKV 812
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 39.5 bits (88), Expect = 0.003
Identities = 27/81 (33%), Positives = 27/81 (33%)
Frame = +1
Query: 652 PPPGKGGXXXGPPPVSPPXXSXPPXXRXXXXXSXPPXGGXXFXPXPGXXXGKXXXXXXPX 831
PPPG GPPP PP PP PP GG P G P
Sbjct: 298 PPPGLPPITGGPPP-PPPPGGLPPI--TGGPPPPPPPGG-----LPPISGGPPPPPPPPG 349
Query: 832 KXPXPXKXPGXXXFXXGPXPP 894
P P P F GP PP
Sbjct: 350 GCPPPPPPPPPGGFKGGPPPP 370
Score = 31.9 bits (69), Expect = 0.66
Identities = 24/87 (27%), Positives = 26/87 (29%)
Frame = +1
Query: 652 PPPGKGGXXXGPPPVSPPXXSXPPXXRXXXXXSXPPXGGXXFXPXPGXXXGKXXXXXXPX 831
PPPG G PP PP PP PP GG P P G P
Sbjct: 313 PPPGGLPPITGGPPPPPPPGGLPP-ISGGPPPPPPPPGGCPPPPPPPPPGG---FKGGPP 368
Query: 832 KXPXPXKXPGXXXFXXGPXPPXXLXKI 912
P P PP + K+
Sbjct: 369 PPPPPGMFAPMAPVIPDYLPPKKVPKV 395
>U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical
protein F25B5.7c protein.
Length = 282
Score = 32.7 bits (71), Expect = 0.38
Identities = 19/52 (36%), Positives = 19/52 (36%)
Frame = -1
Query: 840 GPFXGPXGXXGFXXGXPXXWGKXXXXXGXXGXGXPXPXXRGXGXXGGGNGRG 685
G GP G G G P G G G G P P G G GG G G
Sbjct: 169 GGMGGPPGHGGM--GGPPGHGGQGGPPGHGGMGGPPPGQGGPGGPGGPGGPG 218
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 32.7 bits (71), Expect = 0.38
Identities = 19/52 (36%), Positives = 19/52 (36%)
Frame = -1
Query: 840 GPFXGPXGXXGFXXGXPXXWGKXXXXXGXXGXGXPXPXXRGXGXXGGGNGRG 685
G GP G G G P G G G G P P G G GG G G
Sbjct: 449 GGMGGPPGHGGM--GGPPGHGGQGGPPGHGGMGGPPPGQGGPGGPGGPGGPG 498
>U80023-1|AAG24037.1| 180|Caenorhabditis elegans Hypothetical
protein F07C4.7 protein.
Length = 180
Score = 32.3 bits (70), Expect = 0.50
Identities = 17/48 (35%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
Frame = -1
Query: 783 WGKXXXXXGXXGXGXPXPXXRGXGXXGGGNGRGP-XXXTAFPRGGGXF 643
WG G G G P RG G G GRG + GGG F
Sbjct: 20 WGPGFGGPGFGGPGSGGPGPRGPGEWNNGGGRGGFGGNNGWNNGGGGF 67
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 31.9 bits (69), Expect = 0.66
Identities = 26/95 (27%), Positives = 29/95 (30%), Gaps = 1/95 (1%)
Frame = -1
Query: 891 GGGAXGKXPXTXPFXGVG-PFXGPXGXXGFXXGXPXXWGKXXXXXGXXGXGXPXPXXRGX 715
GG + G + P G G G G G+ G G G G G G
Sbjct: 215 GGSSGGGGYASAPSGGGGYATSGGGGSGGYATGGSSGGG--YSSGGSSGGGYSTGGGGGY 272
Query: 714 GXXGGGNGRGPXXXTAFPRGGGXFFXXXKPXXPPP 610
GGG G GGG P PPP
Sbjct: 273 AGGGGGGGGSSGGYAGSSGGGGYSAPAAAPPPPPP 307
Score = 29.5 bits (63), Expect = 3.5
Identities = 24/81 (29%), Positives = 25/81 (30%)
Frame = -1
Query: 891 GGGAXGKXPXTXPFXGVGPFXGPXGXXGFXXGXPXXWGKXXXXXGXXGXGXPXPXXRGXG 712
GGG G + G G G G G G G G G G G G
Sbjct: 133 GGGGGGCGGGSSGGCGGGSSGGCGGGGGGGCGGGGGGG---CGGGSSGGGGYAVAPSGGG 189
Query: 711 XXGGGNGRGPXXXTAFPRGGG 649
GGG G P GGG
Sbjct: 190 GCGGGGSSGGGGYAVAPSGGG 210
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 31.9 bits (69), Expect = 0.66
Identities = 26/95 (27%), Positives = 29/95 (30%), Gaps = 1/95 (1%)
Frame = -1
Query: 891 GGGAXGKXPXTXPFXGVG-PFXGPXGXXGFXXGXPXXWGKXXXXXGXXGXGXPXPXXRGX 715
GG + G + P G G G G G+ G G G G G G
Sbjct: 215 GGSSGGGGYASAPSGGGGYATSGGGGSGGYATGGSSGGG--YSSGGSSGGGYSTGGGGGY 272
Query: 714 GXXGGGNGRGPXXXTAFPRGGGXFFXXXKPXXPPP 610
GGG G GGG P PPP
Sbjct: 273 AGGGGGGGGSSGGYAGSSGGGGYSAPAAAPPPPPP 307
Score = 29.5 bits (63), Expect = 3.5
Identities = 24/81 (29%), Positives = 25/81 (30%)
Frame = -1
Query: 891 GGGAXGKXPXTXPFXGVGPFXGPXGXXGFXXGXPXXWGKXXXXXGXXGXGXPXPXXRGXG 712
GGG G + G G G G G G G G G G G G
Sbjct: 133 GGGGGGCGGGSSGGCGGGSSGGCGGGGGGGCGGGGGGG---CGGGSSGGGGYAVAPSGGG 189
Query: 711 XXGGGNGRGPXXXTAFPRGGG 649
GGG G P GGG
Sbjct: 190 GCGGGGSSGGGGYAVAPSGGG 210
>U50312-1|AAA92318.1| 285|Caenorhabditis elegans Hypothetical
protein B0222.1 protein.
Length = 285
Score = 31.5 bits (68), Expect = 0.87
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +1
Query: 652 PPPGKGGXXXGPPPVSPPXXSXPP 723
PPPG G GPPP +P + PP
Sbjct: 236 PPPGFQGFQQGPPPSAPVYSAPPP 259
>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
protein C01G8.9a protein.
Length = 1724
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/60 (31%), Positives = 20/60 (33%)
Frame = +2
Query: 713 PXPRXXGXGXPXPXXPXXXXXXPQXXGXPXXXPFXPXGPXXGPTPXXGXVXGXXPXAPPP 892
P P+ G P P P G P P P G P G G P APPP
Sbjct: 708 PQPQQPPQGPPGPPGPQQHPGP--YPGYPGYGPPGAMRPPAGFAPPPGAPYGYPPGAPPP 765
>AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical
protein Y43F8C.20 protein.
Length = 193
Score = 31.1 bits (67), Expect = 1.1
Identities = 26/84 (30%), Positives = 27/84 (32%), Gaps = 2/84 (2%)
Frame = -1
Query: 894 RGGGAXGKXPXTXPFXGVGPFXGPXGXXGFXXGXPXXWGKXXXXXGXXGXGXPXPXXRGX 715
RGGG G G G + G G G G G G G P G
Sbjct: 96 RGGGGRGDWGGNNNGGG-GNWGGGGNNDGGWGGNNGGGGGGRGGGGRGGDGRGPPGSNGG 154
Query: 714 GXXG--GGNGRGPXXXTAFPRGGG 649
G G GG GRG GGG
Sbjct: 155 GDWGGNGGGGRGGGGGRGGGGGGG 178
>U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical
protein C34D4.11 protein.
Length = 136
Score = 30.3 bits (65), Expect = 2.0
Identities = 24/79 (30%), Positives = 25/79 (31%)
Frame = -1
Query: 885 GAXGKXPXTXPFXGVGPFXGPXGXXGFXXGXPXXWGKXXXXXGXXGXGXPXPXXRGXGXX 706
G G P G + G G G WG G G G G G
Sbjct: 47 GWGGGGPGWGRGGGGSGWGGGRGGGWGNNGGGGNWG-GNGGGGNGGGGRGGGGGGGGGRG 105
Query: 705 GGGNGRGPXXXTAFPRGGG 649
GGG GRG RGGG
Sbjct: 106 GGGGGRGGGGGGGGGRGGG 124
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 29.9 bits (64), Expect = 2.7
Identities = 22/72 (30%), Positives = 26/72 (36%), Gaps = 3/72 (4%)
Frame = -1
Query: 891 GGGAXGKXPXTXPFXGVGPFXGP--XGXXGFXXGXPXXWGKXXXXXGXXGXGXPXPXXRG 718
GGG G G G + GP G G+ WG+ G G G P G
Sbjct: 222 GGGGGGGWGGPAQRGGPGAYGGPGGGGQGGYGGDYGGGWGQ-QGGGGQGGWGGPQQQQGG 280
Query: 717 XG-XXGGGNGRG 685
G GG G+G
Sbjct: 281 GGWGQQGGGGQG 292
>AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf family
ATPase protein.
Length = 2395
Score = 29.9 bits (64), Expect = 2.7
Identities = 18/46 (39%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Frame = -1
Query: 732 PXXRGXGXXGGGNGRGPXXXT-AFPRGGGXFFXXXKPXXPPPGXGK 598
P G G GGG GRG T PRGG +P PG G+
Sbjct: 2148 PQVTGSGNNGGGGGRGGYGSTLVMPRGG----RVVRPAGTLPGGGR 2189
>AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical
protein Y111B2A.22 protein.
Length = 2395
Score = 29.9 bits (64), Expect = 2.7
Identities = 18/46 (39%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Frame = -1
Query: 732 PXXRGXGXXGGGNGRGPXXXT-AFPRGGGXFFXXXKPXXPPPGXGK 598
P G G GGG GRG T PRGG +P PG G+
Sbjct: 2148 PQVTGSGNNGGGGGRGGYGSTLVMPRGG----RVVRPAGTLPGGGR 2189
>AL033514-8|CAA22097.2| 715|Caenorhabditis elegans Hypothetical
protein Y75B8A.8 protein.
Length = 715
Score = 29.9 bits (64), Expect = 2.7
Identities = 14/32 (43%), Positives = 15/32 (46%)
Frame = -1
Query: 744 GXPXPXXRGXGXXGGGNGRGPXXXTAFPRGGG 649
G P G G GGG RGP P+GGG
Sbjct: 6 GPGGPMYGGAGGGGGGPPRGPPQQPPQPQGGG 37
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 29.9 bits (64), Expect = 2.7
Identities = 22/72 (30%), Positives = 26/72 (36%), Gaps = 3/72 (4%)
Frame = -1
Query: 891 GGGAXGKXPXTXPFXGVGPFXGP--XGXXGFXXGXPXXWGKXXXXXGXXGXGXPXPXXRG 718
GGG G G G + GP G G+ WG+ G G G P G
Sbjct: 184 GGGGGGGWGGPAQRGGPGAYGGPGGGGQGGYGGDYGGGWGQ-QGGGGQGGWGGPQQQQGG 242
Query: 717 XG-XXGGGNGRG 685
G GG G+G
Sbjct: 243 GGWGQQGGGGQG 254
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 29.9 bits (64), Expect = 2.7
Identities = 22/72 (30%), Positives = 26/72 (36%), Gaps = 3/72 (4%)
Frame = -1
Query: 891 GGGAXGKXPXTXPFXGVGPFXGP--XGXXGFXXGXPXXWGKXXXXXGXXGXGXPXPXXRG 718
GGG G G G + GP G G+ WG+ G G G P G
Sbjct: 222 GGGGGGGWGGPAQRGGPGAYGGPGGGGQGGYGGDYGGGWGQ-QGGGGQGGWGGPQQQQGG 280
Query: 717 XG-XXGGGNGRG 685
G GG G+G
Sbjct: 281 GGWGQQGGGGQG 292
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 29.5 bits (63), Expect = 3.5
Identities = 26/85 (30%), Positives = 27/85 (31%), Gaps = 4/85 (4%)
Frame = +1
Query: 652 PPPGKG----GXXXGPPPVSPPXXSXPPXXRXXXXXSXPPXGGXXFXPXPGXXXGKXXXX 819
PPP G G PPV PP S P PP G P P G
Sbjct: 245 PPPLMGMAQSGYQGQYPPVPPPPPSVTP-----MPPPMPPTPGMTPRPPPPPSSG----M 295
Query: 820 XXPXKXPXPXKXPGXXXFXXGPXPP 894
P P P + PG P PP
Sbjct: 296 WPPPPPPPPGRTPGPPGMPGMPPPP 320
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 29.5 bits (63), Expect = 3.5
Identities = 26/85 (30%), Positives = 27/85 (31%), Gaps = 4/85 (4%)
Frame = +1
Query: 652 PPPGKG----GXXXGPPPVSPPXXSXPPXXRXXXXXSXPPXGGXXFXPXPGXXXGKXXXX 819
PPP G G PPV PP S P PP G P P G
Sbjct: 255 PPPLMGMAQSGYQGQYPPVPPPPPSVTP-----MPPPMPPTPGMTPRPPPPPSSG----M 305
Query: 820 XXPXKXPXPXKXPGXXXFXXGPXPP 894
P P P + PG P PP
Sbjct: 306 WPPPPPPPPGRTPGPPGMPGMPPPP 330
>AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical
protein D1007.7 protein.
Length = 988
Score = 29.5 bits (63), Expect = 3.5
Identities = 18/53 (33%), Positives = 18/53 (33%), Gaps = 1/53 (1%)
Frame = +2
Query: 737 GXPXPXXPXXXXXXPQXXGXPXXXPFXPXGPXXGPTPXXGXVX-GXXPXAPPP 892
G P P P G P P P P GP P G G P PPP
Sbjct: 693 GLPPGVPPMFNLNAPPPPGIPGYPPAPPP-PGVGPPPPQGIPPMGFDPNKPPP 744
Score = 28.3 bits (60), Expect = 8.1
Identities = 27/93 (29%), Positives = 28/93 (30%), Gaps = 12/93 (12%)
Frame = +1
Query: 652 PPPGKGGXXXGPPP--VSPPXXSXPPXXRXXXXXSXPPXGGXXF---XPXP--GXXXGKX 810
PPPG G PPP V PP P PP F P P G G
Sbjct: 708 PPPGIPGYPPAPPPPGVGPPPPQGIPPMGFDPNKPPPPMFQQGFNAGAPPPPFGRGAGPM 767
Query: 811 XXXXXPXK-----XPXPXKXPGXXXFXXGPXPP 894
P + P P G GP PP
Sbjct: 768 SSFPPPPRGGMHHMPPPPSFRGGRGGHGGPPPP 800
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical
protein E02A10.2 protein.
Length = 385
Score = 29.1 bits (62), Expect = 4.6
Identities = 26/83 (31%), Positives = 26/83 (31%), Gaps = 2/83 (2%)
Frame = -1
Query: 891 GGGAXG--KXPXTXPFXGVGPFXGPXGXXGFXXGXPXXWGKXXXXXGXXGXGXPXPXXRG 718
GGG G P P G G G G G G G G G G G
Sbjct: 102 GGGCGGGCAPPPPPPACG-GGCGGGGGGCGGGCGGGGGGGCGGGGGGGCGGGGGGCGGGG 160
Query: 717 XGXXGGGNGRGPXXXTAFPRGGG 649
G GGG G G GGG
Sbjct: 161 GGCGGGGGGCGGGGGGGCGGGGG 183
>Z68008-5|CAD91696.1| 1160|Caenorhabditis elegans Hypothetical protein
R08B4.1b protein.
Length = 1160
Score = 29.1 bits (62), Expect = 4.6
Identities = 22/81 (27%), Positives = 22/81 (27%)
Frame = -1
Query: 891 GGGAXGKXPXTXPFXGVGPFXGPXGXXGFXXGXPXXWGKXXXXXGXXGXGXPXPXXRGXG 712
GGG G G G G G G G G G G G G
Sbjct: 788 GGGGGGNGGSGGGGGGGGGGSGGSGGGGSNSNSGGGGGNGGGGNGGGGNGNGGGAGDGNG 847
Query: 711 XXGGGNGRGPXXXTAFPRGGG 649
G GNG G G G
Sbjct: 848 GAGAGNGNGAGAGNGNGAGAG 868
>U50310-5|AAA92541.1| 318|Caenorhabditis elegans Ground-like (grd
related) protein 9 protein.
Length = 318
Score = 24.2 bits (50), Expect(2) = 5.6
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +1
Query: 655 PPGKGGXXXGPPPVSPP 705
PPG G PP V+PP
Sbjct: 85 PPGMAGPPLLPPAVAPP 101
Score = 23.0 bits (47), Expect(2) = 5.6
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = +1
Query: 685 PPPVSPPXXSXPP 723
PPP SPP PP
Sbjct: 135 PPPPSPPPPPPPP 147
>U88309-2|AAB42334.1| 211|Caenorhabditis elegans Hypothetical
protein T23B3.5 protein.
Length = 211
Score = 28.7 bits (61), Expect = 6.1
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +1
Query: 643 KXXPPPGKGGXXXGPPPVSPPXXSXP 720
K PPP K GPPP +P + P
Sbjct: 26 KKKPPPPKSASKMGPPPPAPAPPTAP 51
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 28.7 bits (61), Expect = 6.1
Identities = 14/39 (35%), Positives = 15/39 (38%), Gaps = 3/39 (7%)
Frame = +1
Query: 652 PPPGKGGXXXGPPPV---SPPXXSXPPXXRXXXXXSXPP 759
PPP G GPPP+ PP PP PP
Sbjct: 1574 PPPRGGSHCQGPPPLMGGPPPRLGMPPPGPPPPNGGPPP 1612
>AF000299-1|AAC47980.1| 210|Caenorhabditis elegans Hypothetical
protein E03H12.5 protein.
Length = 210
Score = 28.7 bits (61), Expect = 6.1
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +1
Query: 643 KXXPPPGKGGXXXGPPPVSPPXXSXP 720
K PPP K GPPP +P + P
Sbjct: 26 KKKPPPPKSASKMGPPPPAPAPPTAP 51
>Z70312-3|CAA94385.1| 172|Caenorhabditis elegans Hypothetical
protein ZC168.5 protein.
Length = 172
Score = 28.3 bits (60), Expect = 8.1
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = +1
Query: 652 PPPGKGGXXXGPPPVSPPXXSXPP 723
PPP GG PPP PP + P
Sbjct: 43 PPPPCGGGYEAPPPPPPPSYAGGP 66
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 28.3 bits (60), Expect = 8.1
Identities = 18/54 (33%), Positives = 18/54 (33%), Gaps = 8/54 (14%)
Frame = +1
Query: 652 PPPGKGGXXXGPP------PVSPPXXS--XPPXXRXXXXXSXPPXGGXXFXPXP 789
PPPG GG PP P PP PP PP G P P
Sbjct: 76 PPPGPGGIPPPPPMFAGGIPPPPPMMGGIPPPPPMFGAPPPPPPPSGLGVAPQP 129
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 28.3 bits (60), Expect = 8.1
Identities = 12/25 (48%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Frame = +1
Query: 652 PPPGKGGXXXGPPPVS-PPXXSXPP 723
PPP G GPPP PP + PP
Sbjct: 435 PPPPGGPGAYGPPPTGFPPVGAPPP 459
>AF098501-3|AAM69106.1| 275|Caenorhabditis elegans Hypothetical
protein H28G03.2c protein.
Length = 275
Score = 28.3 bits (60), Expect = 8.1
Identities = 12/26 (46%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Frame = +1
Query: 652 PPPGKGGXXXGPPPVS--PPXXSXPP 723
PPPG G PPP+ PP PP
Sbjct: 83 PPPGMGPPPFMPPPIGMPPPPLGMPP 108
>AF098501-2|AAM69105.1| 298|Caenorhabditis elegans Hypothetical
protein H28G03.2b protein.
Length = 298
Score = 28.3 bits (60), Expect = 8.1
Identities = 12/26 (46%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Frame = +1
Query: 652 PPPGKGGXXXGPPPVS--PPXXSXPP 723
PPPG G PPP+ PP PP
Sbjct: 106 PPPGMGPPPFMPPPIGMPPPPLGMPP 131
>AF098501-1|AAC67404.2| 548|Caenorhabditis elegans Hypothetical
protein H28G03.2a protein.
Length = 548
Score = 28.3 bits (60), Expect = 8.1
Identities = 12/26 (46%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Frame = +1
Query: 652 PPPGKGGXXXGPPPVS--PPXXSXPP 723
PPPG G PPP+ PP PP
Sbjct: 356 PPPGMGPPPFMPPPIGMPPPPLGMPP 381
>AF039052-9|AAF98625.1| 302|Caenorhabditis elegans Hypothetical
protein T22D1.2 protein.
Length = 302
Score = 28.3 bits (60), Expect = 8.1
Identities = 19/71 (26%), Positives = 20/71 (28%), Gaps = 1/71 (1%)
Frame = +1
Query: 652 PPPGKGGXXXGPPPVSPPXXSXPPXXRXXXXXSXPPXG-GXXFXPXPGXXXGKXXXXXXP 828
PPP KG PPP P PP G G P G
Sbjct: 65 PPPPKGTGTPPPPPTGEPQDLSAEEGNASRRPPPPPKGTGTPPPPPTGEPQDLSGEGNAS 124
Query: 829 XKXPXPXKXPG 861
+ P P K G
Sbjct: 125 RRPPPPPKGTG 135
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 28.3 bits (60), Expect = 8.1
Identities = 23/73 (31%), Positives = 27/73 (36%), Gaps = 4/73 (5%)
Frame = -1
Query: 891 GGGAXGKXPXTXPFXGVGPFXGP--XGXXGFXXG-XPXXWGKXXXXXGXXGXGXPXPXXR 721
GGG G G G + GP G G+ G WG+ G G G P
Sbjct: 184 GGGGGGGWGGPAQRGGPGAYGGPGGGGQGGYGGGNYGGGWGQ-QGGGGQGGWGGPQQQQG 242
Query: 720 GXG-XXGGGNGRG 685
G G GG G+G
Sbjct: 243 GGGWGQQGGGGQG 255
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 28.3 bits (60), Expect = 8.1
Identities = 23/73 (31%), Positives = 27/73 (36%), Gaps = 4/73 (5%)
Frame = -1
Query: 891 GGGAXGKXPXTXPFXGVGPFXGP--XGXXGFXXG-XPXXWGKXXXXXGXXGXGXPXPXXR 721
GGG G G G + GP G G+ G WG+ G G G P
Sbjct: 222 GGGGGGGWGGPAQRGGPGAYGGPGGGGQGGYGGGNYGGGWGQ-QGGGGQGGWGGPQQQQG 280
Query: 720 GXG-XXGGGNGRG 685
G G GG G+G
Sbjct: 281 GGGWGQQGGGGQG 293
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 28.3 bits (60), Expect = 8.1
Identities = 22/84 (26%), Positives = 24/84 (28%), Gaps = 6/84 (7%)
Frame = +1
Query: 652 PPPGKGG----XXXGPPPVSPPXXSXPPXXRXXXXXS--XPPXGGXXFXPXPGXXXGKXX 813
PPP GG G PP PP PP + PP G P P +
Sbjct: 281 PPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAP 340
Query: 814 XXXXPXKXPXPXKXPGXXXFXXGP 885
P P P GP
Sbjct: 341 ERSPPTGSPPTGSPPTGRPPRGGP 364
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 28.3 bits (60), Expect = 8.1
Identities = 22/84 (26%), Positives = 24/84 (28%), Gaps = 6/84 (7%)
Frame = +1
Query: 652 PPPGKGG----XXXGPPPVSPPXXSXPPXXRXXXXXS--XPPXGGXXFXPXPGXXXGKXX 813
PPP GG G PP PP PP + PP G P P +
Sbjct: 302 PPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAP 361
Query: 814 XXXXPXKXPXPXKXPGXXXFXXGP 885
P P P GP
Sbjct: 362 ERSPPTGSPPTGSPPTGRPPRGGP 385
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 28.3 bits (60), Expect = 8.1
Identities = 22/84 (26%), Positives = 24/84 (28%), Gaps = 6/84 (7%)
Frame = +1
Query: 652 PPPGKGG----XXXGPPPVSPPXXSXPPXXRXXXXXS--XPPXGGXXFXPXPGXXXGKXX 813
PPP GG G PP PP PP + PP G P P +
Sbjct: 287 PPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAP 346
Query: 814 XXXXPXKXPXPXKXPGXXXFXXGP 885
P P P GP
Sbjct: 347 ERSPPTGSPPTGSPPTGRPPRGGP 370
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,250,998
Number of Sequences: 27780
Number of extensions: 218351
Number of successful extensions: 1033
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 813
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2339274014
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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