Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_E16
(915 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g04170.1 68415.m00402 meprin and TRAF homology domain-contain... 38 0.009
At1g76010.1 68414.m08825 expressed protein 34 0.15
At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex... 32 0.46
At1g59910.1 68414.m06749 formin homology 2 domain-containing pro... 32 0.46
At5g54650.2 68418.m06805 formin homology 2 domain-containing pro... 32 0.61
At5g54650.1 68418.m06804 formin homology 2 domain-containing pro... 32 0.61
At4g22670.1 68417.m03272 tetratricopeptide repeat (TPR)-containi... 32 0.61
At4g15200.1 68417.m02329 formin homology 2 domain-containing pro... 31 0.81
At1g31810.1 68414.m03904 formin homology 2 domain-containing pro... 31 1.4
At4g29030.1 68417.m04151 glycine-rich protein glycine-rich prote... 30 1.9
At3g15000.1 68416.m01897 expressed protein similar to DAG protei... 30 1.9
At3g11030.1 68416.m01331 expressed protein contains Pfam domain ... 30 1.9
At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identica... 30 1.9
At2g14890.1 68415.m01693 arabinogalactan-protein (AGP9) identica... 30 1.9
At4g20440.2 68417.m02983 small nuclear ribonucleoprotein associa... 30 2.5
At4g20440.1 68417.m02982 small nuclear ribonucleoprotein associa... 30 2.5
At3g22800.1 68416.m02874 leucine-rich repeat family protein / ex... 30 2.5
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex... 29 3.2
At3g44340.1 68416.m04764 sec23/sec24 transport family protein co... 29 3.2
At3g53760.1 68416.m05939 tubulin family protein similar to SP|Q9... 29 4.3
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 29 5.7
At5g19080.1 68418.m02268 zinc finger (C3HC4-type RING finger) fa... 29 5.7
At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family... 29 5.7
At2g27380.1 68415.m03302 proline-rich family protein contains pr... 28 7.5
At5g07760.1 68418.m00888 formin homology 2 domain-containing pro... 28 9.9
At4g01985.1 68417.m00265 expressed protein 28 9.9
At3g19430.1 68416.m02464 late embryogenesis abundant protein-rel... 28 9.9
At1g61080.1 68414.m06877 proline-rich family protein 28 9.9
At1g20130.1 68414.m02518 family II extracellular lipase, putativ... 28 9.9
>At2g04170.1 68415.m00402 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein weak similarity
to NtN2 [Medicago truncatula] GI:3776084; contains Pfam
profile PF00917: MATH domain
Length = 420
Score = 37.9 bits (84), Expect = 0.009
Identities = 31/97 (31%), Positives = 32/97 (32%), Gaps = 1/97 (1%)
Frame = -1
Query: 888 GGAXGKXPXTXPFXGVGPFXGPXGXXGFXXGXPXXW-GKXXXXXGXXGXGXPXPXXRGXG 712
GG G+ G GP GP G GF G P G G G G P G G
Sbjct: 7 GGGPGRGGRGFGGRGGGPGFGP-GGPGFGPGGPGFGPGGPGFGPGGPGFGGRGPRGPGFG 65
Query: 711 XXGGGNGRGPXXXTAFPRGGGXFFXXXKPXXPPPGXG 601
G G GP GG P P PG G
Sbjct: 66 PRGPGPWSGPRGPRPGGGGGPGPGPWSGPRGPRPGGG 102
Score = 33.1 bits (72), Expect = 0.26
Identities = 28/82 (34%), Positives = 28/82 (34%), Gaps = 1/82 (1%)
Frame = -1
Query: 891 GGGAXGKXPXTXPFXGVGPFXGPXGXXGFXXGXPXXW-GKXXXXXGXXGXGXPXPXXRGX 715
G G G P F G GP GP GF P W G G G P P
Sbjct: 41 GPGGPGFGPGGPGFGGRGP-RGP----GFGPRGPGPWSGPRGPRPGGGGGPGPGPWSGPR 95
Query: 714 GXXGGGNGRGPXXXTAFPRGGG 649
G GG G GP GGG
Sbjct: 96 GPRPGGGG-GPGSGCGSGTGGG 116
>At1g76010.1 68414.m08825 expressed protein
Length = 350
Score = 33.9 bits (74), Expect = 0.15
Identities = 24/73 (32%), Positives = 27/73 (36%), Gaps = 3/73 (4%)
Frame = -1
Query: 894 RGG--GAXGKXPXTXPFXGVGPFXGPX-GXXGFXXGXPXXWGKXXXXXGXXGXGXPXPXX 724
RGG G G+ P G G + GP G G+ G G G P
Sbjct: 256 RGGYDGPQGRRGYDGPPQGRGGYDGPSQGRGGYDGPSQGRGGYDGPSQGRGGYDGPQGRG 315
Query: 723 RGXGXXGGGNGRG 685
RG G GG GRG
Sbjct: 316 RGRGRGRGGRGRG 328
>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 839
Score = 32.3 bits (70), Expect = 0.46
Identities = 16/46 (34%), Positives = 17/46 (36%)
Frame = +1
Query: 652 PPPGKGGXXXGPPPVSPPXXSXPPXXRXXXXXSXPPXGGXXFXPXP 789
PPP PPP SP S PP S PP + P P
Sbjct: 758 PPPPPTVHYNPPPPPSPAHYSPPPSPPVYYYNSPPPPPAVHYSPPP 803
Score = 29.1 bits (62), Expect = 4.3
Identities = 21/83 (25%), Positives = 23/83 (27%), Gaps = 2/83 (2%)
Frame = +1
Query: 652 PPPGKGGXXXGPPPVSPPXXSXPPXXRXXXXXSXPPXGGXXFXPXPGXXXG--KXXXXXX 825
PPP P P PP S PP S PP P P +
Sbjct: 702 PPPPAPYYYSSPQPPPPPHYSLPPPTPTYHYISPPPPPTPIHSPPPQSHPPCIEYSPPPP 761
Query: 826 PXKXPXPXKXPGXXXFXXGPXPP 894
P P P + P PP
Sbjct: 762 PTVHYNPPPPPSPAHYSPPPSPP 784
>At1g59910.1 68414.m06749 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02128
Length = 929
Score = 32.3 bits (70), Expect = 0.46
Identities = 21/80 (26%), Positives = 23/80 (28%)
Frame = +1
Query: 622 GXFXXXKKXXPPPGKGGXXXGPPPVSPPXXSXPPXXRXXXXXSXPPXGGXXFXPXPGXXX 801
G F PPG PPP P + PP + PP P P
Sbjct: 364 GQFTTANAPPAPPGPANQTSPPPPPPPSAAAPPPPPPPKKGPAAPP------PPPPPGKK 417
Query: 802 GKXXXXXXPXKXPXPXKXPG 861
G P P K PG
Sbjct: 418 GAGPPPPPPMSKKGPPKPPG 437
>At5g54650.2 68418.m06805 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 900
Score = 31.9 bits (69), Expect = 0.61
Identities = 15/38 (39%), Positives = 15/38 (39%)
Frame = +1
Query: 652 PPPGKGGXXXGPPPVSPPXXSXPPXXRXXXXXSXPPXG 765
PPPG GG PPP P PP PP G
Sbjct: 393 PPPGSGGPKP-PPPPGPKGPRPPPPMSLGPKAPRPPSG 429
>At5g54650.1 68418.m06804 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 900
Score = 31.9 bits (69), Expect = 0.61
Identities = 15/38 (39%), Positives = 15/38 (39%)
Frame = +1
Query: 652 PPPGKGGXXXGPPPVSPPXXSXPPXXRXXXXXSXPPXG 765
PPPG GG PPP P PP PP G
Sbjct: 393 PPPGSGGPKP-PPPPGPKGPRPPPPMSLGPKAPRPPSG 429
>At4g22670.1 68417.m03272 tetratricopeptide repeat (TPR)-containing
protein similar to Hsc70-interacting protein (Hip) from
{Homo sapiens} SP|P50502, {Rattus norvegicus} SP|P50503;
contains Pfam profile PF00515: tetratricopeptide repeat
(TPR) domain
Length = 441
Score = 31.9 bits (69), Expect = 0.61
Identities = 28/89 (31%), Positives = 28/89 (31%), Gaps = 8/89 (8%)
Frame = -1
Query: 891 GGGAXGKXPXTXPFXGVGPFXGPXGXX--GFXXGXPXXWGKXXXXXGXXGXGXPXPXXRG 718
GGG G P P G F G G GF G G G G G P G
Sbjct: 290 GGGFPGGMPGGFPGGMPGGFPGGMGGMPGGFPGGMGGMGGMPGGFPGGMGGGMPAGMGGG 349
Query: 717 XGXXGGGNGRG------PXXXTAFPRGGG 649
GGG G P P GGG
Sbjct: 350 MPGMGGGMPAGMGGGGMPGAGGGMPGGGG 378
>At4g15200.1 68417.m02329 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 600
Score = 31.5 bits (68), Expect = 0.81
Identities = 13/38 (34%), Positives = 14/38 (36%)
Frame = +1
Query: 652 PPPGKGGXXXGPPPVSPPXXSXPPXXRXXXXXSXPPXG 765
PPP PPP PP PP + PP G
Sbjct: 266 PPPPAAAPPPQPPPPPPPKPQPPPPPKIARPPPAPPKG 303
>At1g31810.1 68414.m03904 formin homology 2 domain-containing
protein / FH2 domain-containing protein low similarity
to SP|P48608 Diaphanous protein {Drosophila
melanogaster}; contains Pfam profile PF02181: Formin
Homology 2(FH2) Domain
Length = 1201
Score = 30.7 bits (66), Expect = 1.4
Identities = 18/70 (25%), Positives = 20/70 (28%)
Frame = +1
Query: 685 PPPVSPPXXSXPPXXRXXXXXSXPPXGGXXFXPXPGXXXGKXXXXXXPXKXPXPXKXPGX 864
PPP PP PP R S PP + P P P + P
Sbjct: 595 PPPRPPPPPPPPPSSRSIPSPSAPPPPPPPPPSFGSTGNKRQAQPPPPPPPPPPTRIPAA 654
Query: 865 XXFXXGPXPP 894
P PP
Sbjct: 655 KCAPPPPPPP 664
Score = 28.7 bits (61), Expect = 5.7
Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Frame = +1
Query: 652 PPPGKG-GXXXGPPPVSPPXXSXPP 723
PPPG G G GPPP+ + PP
Sbjct: 741 PPPGLGRGTSSGPPPLGAKGSNAPP 765
>At4g29030.1 68417.m04151 glycine-rich protein glycine-rich protein
- Onobrychis viciifolia,PID:g2565429
Length = 115
Score = 30.3 bits (65), Expect = 1.9
Identities = 24/78 (30%), Positives = 25/78 (32%), Gaps = 1/78 (1%)
Frame = -1
Query: 891 GGGAXGKXPXTXPFXGV-GPFXGPXGXXGFXXGXPXXWGKXXXXXGXXGXGXPXPXXRGX 715
GGG G PF GV G GP G G+ G G G G G
Sbjct: 39 GGGYSGVGDNGLPFGGVGGGVSGPGGNLGYGGFGGAGGGLGGGLGGGAGSGLGGGLGGGS 98
Query: 714 GXXGGGNGRGPXXXTAFP 661
G G G G FP
Sbjct: 99 G-IGAGTSGGSTGGVHFP 115
>At3g15000.1 68416.m01897 expressed protein similar to DAG protein
(required for chloroplast differentiation and palisade
development) GB:Q38732 [Antirrhinum majus]
Length = 395
Score = 30.3 bits (65), Expect = 1.9
Identities = 22/74 (29%), Positives = 23/74 (31%), Gaps = 3/74 (4%)
Frame = +1
Query: 682 GPPPVSPPXXSXPPXXRXXXXXSXPPXGGXXFXPXP--GXXXG-KXXXXXXPXKXPXPXK 852
GPPP PP PP PP G P P G G + P P
Sbjct: 240 GPPPQRPPMGGPPPPPHIGGSAPPPPHMGGSAPPPPHMGQNYGPPPPNNMGGPRHPPPYG 299
Query: 853 XPGXXXFXXGPXPP 894
P GP PP
Sbjct: 300 APPQNNM-GGPRPP 312
Score = 28.7 bits (61), Expect = 5.7
Identities = 15/50 (30%), Positives = 17/50 (34%)
Frame = +1
Query: 655 PPGKGGXXXGPPPVSPPXXSXPPXXRXXXXXSXPPXGGXXFXPXPGXXXG 804
PP + GPPP S PP PP G + P P G
Sbjct: 241 PPPQRPPMGGPPPPPHIGGSAPPPPHMGGSAPPPPHMGQNYGPPPPNNMG 290
>At3g11030.1 68416.m01331 expressed protein contains Pfam domain
PF03005: Arabidopsis proteins of unknown function
Length = 451
Score = 30.3 bits (65), Expect = 1.9
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = +1
Query: 652 PPPGKGGXXXGPPPVSPPXXSXPP 723
PPP PPP SPP S PP
Sbjct: 66 PPPPTSPPPPSPPPPSPPPPSPPP 89
>At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identical
to gi|10880495|gb|AAG24277
Length = 176
Score = 30.3 bits (65), Expect = 1.9
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +1
Query: 652 PPPGKGGXXXGPPPVSPPXXSXPPXXRXXXXXSXPP 759
PPP PPP +PP + PP + PP
Sbjct: 71 PPPVSSPPPASPPPATPPPVASPPPPVASPPPATPP 106
Score = 29.1 bits (62), Expect = 4.3
Identities = 12/36 (33%), Positives = 14/36 (38%)
Frame = +1
Query: 652 PPPGKGGXXXGPPPVSPPXXSXPPXXRXXXXXSXPP 759
PP PPP SPP + PP + PP
Sbjct: 66 PPANPPPPVSSPPPASPPPATPPPVASPPPPVASPP 101
>At2g14890.1 68415.m01693 arabinogalactan-protein (AGP9) identical
to gi|10880495|gb|AAG24277
Length = 191
Score = 30.3 bits (65), Expect = 1.9
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +1
Query: 652 PPPGKGGXXXGPPPVSPPXXSXPPXXRXXXXXSXPP 759
PPP PPP +PP + PP + PP
Sbjct: 71 PPPVSSPPPASPPPATPPPVASPPPPVASPPPATPP 106
Score = 29.1 bits (62), Expect = 4.3
Identities = 12/36 (33%), Positives = 14/36 (38%)
Frame = +1
Query: 652 PPPGKGGXXXGPPPVSPPXXSXPPXXRXXXXXSXPP 759
PP PPP SPP + PP + PP
Sbjct: 66 PPANPPPPVSSPPPASPPPATPPPVASPPPPVASPP 101
>At4g20440.2 68417.m02983 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|Q05856 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Drosophila melanogaster}
Length = 257
Score = 29.9 bits (64), Expect = 2.5
Identities = 23/74 (31%), Positives = 26/74 (35%), Gaps = 9/74 (12%)
Frame = +1
Query: 652 PPPGKGGXXX----GPPP---VSPPXX--SXPPXXRXXXXXSXPPXGGXXFXPXPGXXXG 804
PPP GG GPPP + PP S PP + PP GG P P
Sbjct: 167 PPPPFGGQGPPMGRGPPPPYGMRPPPQQFSGPPPPQYGQRPMIPPPGGMMRGPPPPPHGM 226
Query: 805 KXXXXXXPXKXPXP 846
+ P P P
Sbjct: 227 QGPPPPRPGMPPAP 240
>At4g20440.1 68417.m02982 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|Q05856 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Drosophila melanogaster}
Length = 257
Score = 29.9 bits (64), Expect = 2.5
Identities = 23/74 (31%), Positives = 26/74 (35%), Gaps = 9/74 (12%)
Frame = +1
Query: 652 PPPGKGGXXX----GPPP---VSPPXX--SXPPXXRXXXXXSXPPXGGXXFXPXPGXXXG 804
PPP GG GPPP + PP S PP + PP GG P P
Sbjct: 167 PPPPFGGQGPPMGRGPPPPYGMRPPPQQFSGPPPPQYGQRPMIPPPGGMMRGPPPPPHGM 226
Query: 805 KXXXXXXPXKXPXP 846
+ P P P
Sbjct: 227 QGPPPPRPGMPPAP 240
>At3g22800.1 68416.m02874 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycsimilar to extensin-like protein [Lycopersicon
esculentum] gi|5917664|gb|AAD55979; contains
leucine-rich repeats, Pfam:PF00560; contains proline
rich extensin domains, INTERPRO:IPR002965
Length = 470
Score = 29.9 bits (64), Expect = 2.5
Identities = 21/81 (25%), Positives = 22/81 (27%)
Frame = +1
Query: 652 PPPGKGGXXXGPPPVSPPXXSXPPXXRXXXXXSXPPXGGXXFXPXPGXXXGKXXXXXXPX 831
PPP PPP PP PP PP P P P
Sbjct: 383 PPPPPPPPPPPPPPPPPPPPPPPPPYVYPSPPPPPPSPPPYVYPPPPPPYVYPPPPSPPY 442
Query: 832 KXPXPXKXPGXXXFXXGPXPP 894
P P P + P PP
Sbjct: 443 VYPPPPPSPQPYMY---PSPP 460
Score = 27.9 bits (59), Expect = 9.9
Identities = 16/70 (22%), Positives = 18/70 (25%)
Frame = +1
Query: 685 PPPVSPPXXSXPPXXRXXXXXSXPPXGGXXFXPXPGXXXGKXXXXXXPXKXPXPXKXPGX 864
PPP PP PP PP + P P P P
Sbjct: 380 PPPPPPPPPPPPPPPPPPPPPPPPPPPPYVYPSPPPPPPSPPPYVYPPPPPPYVYPPPPS 439
Query: 865 XXFXXGPXPP 894
+ P PP
Sbjct: 440 PPYVYPPPPP 449
Score = 27.9 bits (59), Expect = 9.9
Identities = 13/36 (36%), Positives = 13/36 (36%)
Frame = +1
Query: 652 PPPGKGGXXXGPPPVSPPXXSXPPXXRXXXXXSXPP 759
PPP PPP PP PP S PP
Sbjct: 380 PPPPPPPPPPPPPPPPPPPPPPPPPPPPYVYPSPPP 415
>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 760
Score = 29.5 bits (63), Expect = 3.2
Identities = 18/69 (26%), Positives = 19/69 (27%)
Frame = +1
Query: 652 PPPGKGGXXXGPPPVSPPXXSXPPXXRXXXXXSXPPXGGXXFXPXPGXXXGKXXXXXXPX 831
PPP PPP PP PP PP + P P P
Sbjct: 440 PPPPPPPPVYSPPP-PPPPPPPPPVYSPPPPPPPPPPPPPVYSPPPPSPPPPPPPVYSPP 498
Query: 832 KXPXPXKXP 858
P P P
Sbjct: 499 PPPPPPPPP 507
Score = 28.7 bits (61), Expect = 5.7
Identities = 21/81 (25%), Positives = 22/81 (27%)
Frame = +1
Query: 652 PPPGKGGXXXGPPPVSPPXXSXPPXXRXXXXXSXPPXGGXXFXPXPGXXXGKXXXXXXPX 831
PPP P SPP S PP PP + P P P
Sbjct: 410 PPPPAPIFSTPPTLTSPPPPSPPPPVYSPPPPPPPPP--PVYSPPPPPPPPPPPPVYSPP 467
Query: 832 KXPXPXKXPGXXXFXXGPXPP 894
P P P P PP
Sbjct: 468 PPPPPPPPPPPVYSPPPPSPP 488
Score = 28.3 bits (60), Expect = 7.5
Identities = 19/81 (23%), Positives = 21/81 (25%)
Frame = +2
Query: 650 PPPRGKAVXXXXXXXXXXXXXPXPRXXGXGXPXPXXPXXXXXXPQXXGXPXXXPFXPXGP 829
PPP P P P P P P P + P P
Sbjct: 410 PPPPAPIFSTPPTLTSPPPPSPPPPVYSPPPPPPPPPPVYSPPPPPPPPPPPPVYSPPPP 469
Query: 830 XXGPTPXXGXVXGXXPXAPPP 892
P P V P +PPP
Sbjct: 470 PPPPPPPP-PVYSPPPPSPPP 489
>At3g44340.1 68416.m04764 sec23/sec24 transport family protein
contains Pfam domains PF04811: Sec23/Sec24 trunk domain,
PF04815: Sec23/Sec24 helical domain and PF04810:
Sec23/Sec24 zinc finger
Length = 1096
Score = 29.5 bits (63), Expect = 3.2
Identities = 14/39 (35%), Positives = 15/39 (38%)
Frame = +1
Query: 652 PPPGKGGXXXGPPPVSPPXXSXPPXXRXXXXXSXPPXGG 768
PPP GPP VS P P + PP GG
Sbjct: 89 PPPAAMARPGGPPQVSQPGGFPPVGRPVAPPSNQPPFGG 127
>At3g53760.1 68416.m05939 tubulin family protein similar to
SP|Q9SC88 Gamma-tubulin complex component 4 homolog
{Medicago truncatula}, SP|Q9UGJ1|GCP4_HUMAN
Gamma-tubulin complex component 4 {Homo sapiens};
contains Pfam profile PF04130: Spc97 / Spc98 family
Length = 745
Score = 29.1 bits (62), Expect = 4.3
Identities = 13/38 (34%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
Frame = -3
Query: 124 EDDKYFNRFTVRLPC--TSVRQNKKTKILREVPLXGES 17
E+DKYF+R ++R+P +VR ++ + +V L G++
Sbjct: 458 EEDKYFSRVSLRMPSFGVTVRSSQADMVRSKVSLTGKA 495
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 28.7 bits (61), Expect = 5.7
Identities = 20/67 (29%), Positives = 22/67 (32%)
Frame = -1
Query: 840 GPFXGPXGXXGFXXGXPXXWGKXXXXXGXXGXGXPXPXXRGXGXXGGGNGRGPXXXTAFP 661
G + GP G G G G G G G G GGG G G
Sbjct: 336 GGYGGPSGSYGGGYGSSGIGGYGGGMGGAGGGGYRGGGGYDMGGVGGG-GAGGYGAGGGG 394
Query: 660 RGGGXFF 640
GGG F+
Sbjct: 395 NGGGSFY 401
>At5g19080.1 68418.m02268 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 378
Score = 28.7 bits (61), Expect = 5.7
Identities = 15/44 (34%), Positives = 16/44 (36%)
Frame = +1
Query: 652 PPPGKGGXXXGPPPVSPPXXSXPPXXRXXXXXSXPPXGGXXFXP 783
PPP G PVS P S PP S PP + P
Sbjct: 35 PPPQNGYSYSHNYPVSTPQLSLPPPPAQPPSSSQPPPSQISYRP 78
>At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family
protein Common family members: At4g18570, At4g04980,
At5g61090 [Arabidopsis thaliana]; identical to cDNA
CHUP1 for actin binding protein GI:28071264
Length = 1004
Score = 28.7 bits (61), Expect = 5.7
Identities = 15/38 (39%), Positives = 15/38 (39%)
Frame = +1
Query: 655 PPGKGGXXXGPPPVSPPXXSXPPXXRXXXXXSXPPXGG 768
PP GG GPPP PP PP PP G
Sbjct: 672 PPLPGG---GPPPPPPPPGGGPPPPPGGGPPPPPPPPG 706
>At2g27380.1 68415.m03302 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 761
Score = 28.3 bits (60), Expect = 7.5
Identities = 13/36 (36%), Positives = 13/36 (36%)
Frame = +1
Query: 652 PPPGKGGXXXGPPPVSPPXXSXPPXXRXXXXXSXPP 759
PPP K PPV PP PP PP
Sbjct: 472 PPPVKPPTPTYSPPVQPPPVQKPPTPTYSPPVKPPP 507
>At5g07760.1 68418.m00888 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 853
Score = 27.9 bits (59), Expect = 9.9
Identities = 19/68 (27%), Positives = 20/68 (29%)
Frame = +1
Query: 655 PPGKGGXXXGPPPVSPPXXSXPPXXRXXXXXSXPPXGGXXFXPXPGXXXGKXXXXXXPXK 834
PP +G PPP PP PP R PP P P P
Sbjct: 15 PPMRGRVPLPPPPPPPP----PPMRRRAPLPPPPPPPMRRRAPLPPPPPPAMRRRVLPRP 70
Query: 835 XPXPXKXP 858
P P P
Sbjct: 71 PPPPPPLP 78
>At4g01985.1 68417.m00265 expressed protein
Length = 579
Score = 27.9 bits (59), Expect = 9.9
Identities = 25/80 (31%), Positives = 25/80 (31%)
Frame = -1
Query: 888 GGAXGKXPXTXPFXGVGPFXGPXGXXGFXXGXPXXWGKXXXXXGXXGXGXPXPXXRGXGX 709
GGA G GVG G G G G G G G G RG G
Sbjct: 413 GGAGGAGGSVGAGGGVG--GGVGGGVGGGVGGAVG-GAVGGAVGGGGGGSVGGGGRGSGG 469
Query: 708 XGGGNGRGPXXXTAFPRGGG 649
GGG G GGG
Sbjct: 470 AGGGTGGSVGAGGGVGVGGG 489
>At3g19430.1 68416.m02464 late embryogenesis abundant
protein-related / LEA protein-related similar to late
embryogenesis abundant protein [Picea glauca] GI:1350543
Length = 559
Score = 27.9 bits (59), Expect = 9.9
Identities = 16/60 (26%), Positives = 16/60 (26%)
Frame = +2
Query: 713 PXPRXXGXGXPXPXXPXXXXXXPQXXGXPXXXPFXPXGPXXGPTPXXGXVXGXXPXAPPP 892
P P P P P P P P P P PTP V P P
Sbjct: 158 PTPSVPSPTPPVPTDPMPSPPPPVSPPPPTPTPSVPSPPDVTPTPPTPSVPSPPDVTPTP 217
>At1g61080.1 68414.m06877 proline-rich family protein
Length = 907
Score = 27.9 bits (59), Expect = 9.9
Identities = 24/92 (26%), Positives = 26/92 (28%), Gaps = 13/92 (14%)
Frame = +1
Query: 658 PGKGGXXXGPPP-------VSPPXXSXPPXXRXXXXXSXPPXGGXXFXPXPGXXXGKXXX 816
P KG PPP +PP PP PP G P P G
Sbjct: 502 PLKGSAPPPPPPPPLPTTIAAPPPPPPPPRAAVAPPPPPPPPGTAAAPPPPPPPPGTQAA 561
Query: 817 XXXP------XKXPXPXKXPGXXXFXXGPXPP 894
P + P P P GP PP
Sbjct: 562 PPPPPPPPMQNRAPSPPPMPMGNSGSGGPPPP 593
>At1g20130.1 68414.m02518 family II extracellular lipase, putative
contains Pfam profile PF00657: GDSL-like
Lipase/Acylhydrolase; similar to EXL3 (PMID:11431566)
Length = 1006
Score = 27.9 bits (59), Expect = 9.9
Identities = 19/86 (22%), Positives = 23/86 (26%), Gaps = 4/86 (4%)
Frame = +2
Query: 650 PPPRGKAVXXXXXXXXXXXXXPXPRXXGXGXPXPXXPXXXXXXP----QXXGXPXXXPFX 817
PPP+ + P P+ P P P P P P
Sbjct: 54 PPPKPQPKPVPPPACPPTPPKPQPKPAPPPEPKPAPPPAPKPVPCPSPPKPPAPTPKPVP 113
Query: 818 PXGPXXGPTPXXGXVXGXXPXAPPPR 895
P GP P P P PP+
Sbjct: 114 PHGPPPKPAPAPTPAPSPKPAPSPPK 139
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,554,610
Number of Sequences: 28952
Number of extensions: 192061
Number of successful extensions: 1115
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2168774904
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -