Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_E15
         (952 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0712 + 5329016-5329744,5330477-5330521                           32   0.58 
06_01_1052 + 8312752-8312862,8312969-8313041,8313285-8313362,831...    30   2.4  
02_04_0064 - 19375497-19375580,19375659-19375733,19376359-193765...    28   9.5  

>02_01_0712 + 5329016-5329744,5330477-5330521
          Length = 257

 Score = 32.3 bits (70), Expect = 0.58
 Identities = 18/36 (50%), Positives = 22/36 (61%)
 Frame = +3

Query: 180 ENGGDSPDGEVAPGVDPVKVVDEDHGVNIVDGEPGG 287
           E GG+S  GE A  VDP+ VV E+ G +   GEP G
Sbjct: 188 EEGGESDRGEPAGAVDPLPVVVEEGGWS-GRGEPAG 222


>06_01_1052 +
           8312752-8312862,8312969-8313041,8313285-8313362,
           8313443-8313523,8313706-8313779,8313865-8313919,
           8314031-8314079,8314222-8314359,8314455-8314536,
           8315131-8315209,8315357-8315400,8315479-8315673,
           8316110-8316185,8317427-8317507,8317623-8317703,
           8318128-8318204,8318402-8318499,8318672-8318809,
           8319397-8319478,8319564-8319642,8319885-8319931,
           8320014-8320228,8320330-8320450,8320529-8320648,
           8320731-8320849,8320964-8321036,8321112-8321231,
           8321538-8321606,8321756-8321926,8322004-8322051,
           8322192-8322333,8323244-8323341,8323684-8323828,
           8323928-8324013,8324112-8324222,8324456-8324530,
           8324836-8324901,8325036-8325224,8325315-8325425,
           8326616-8326696,8327192-8327371
          Length = 1385

 Score = 30.3 bits (65), Expect = 2.4
 Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
 Frame = +3

Query: 129 VAFALIAMFAIVAVNSQE--NGGDSPDGEVAPGVDPVKVVDEDHGVNIVD 272
           +A A+I    +VAV+ Q+  +G  S +G+    V P+KV ++  GVNI+D
Sbjct: 253 MAKAVIFPLPLVAVSYQQLIHGCSSANGDAL--VSPLKVWEQSFGVNIID 300


>02_04_0064 -
           19375497-19375580,19375659-19375733,19376359-19376514,
           19377016-19377093,19377328-19377428,19377570-19377717,
           19378172-19378316,19378803-19378906,19380257-19380385,
           19380526-19380636,19380734-19380863,19381915-19382034,
           19382360-19382481,19382965-19383048,19383241-19383357,
           19383442-19383522,19384138-19384197,19384398-19384440,
           19384528-19384626,19385353-19385564,19385964-19386091,
           19386246-19386396
          Length = 825

 Score = 28.3 bits (60), Expect = 9.5
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -3

Query: 254 MIFIHNFHWINAGGDFAIG 198
           ++F+ NFHW N+  D+ +G
Sbjct: 747 LVFVFNFHWSNSYFDYRVG 765


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,847,248
Number of Sequences: 37544
Number of extensions: 132593
Number of successful extensions: 412
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 412
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2741249160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)