Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_E13
(737 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_11994| Best HMM Match : ERM (HMM E-Value=0.28) 26 1.3
SB_47282| Best HMM Match : RCSD (HMM E-Value=0.53) 26 1.3
SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33) 29 3.0
SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05) 29 3.9
SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013) 29 3.9
SB_34481| Best HMM Match : Extensin_2 (HMM E-Value=0.48) 29 3.9
SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.2
SB_6245| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_53865| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1) 28 9.1
SB_15263| Best HMM Match : Jun (HMM E-Value=1.8) 28 9.1
SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10) 28 9.1
>SB_11994| Best HMM Match : ERM (HMM E-Value=0.28)
Length = 465
Score = 25.8 bits (54), Expect(2) = 1.3
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = +2
Query: 398 PPXXXPPPPXGXKXP 442
PP PPPP G K P
Sbjct: 285 PPPPPPPPPPGAKKP 299
Score = 23.4 bits (48), Expect(2) = 1.3
Identities = 8/16 (50%), Positives = 8/16 (50%)
Frame = +2
Query: 377 PPXXXRXPPXXXPPPP 424
PP PP PPPP
Sbjct: 274 PPPLCAPPPPPPPPPP 289
>SB_47282| Best HMM Match : RCSD (HMM E-Value=0.53)
Length = 264
Score = 25.8 bits (54), Expect(2) = 1.3
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = +2
Query: 398 PPXXXPPPPXGXKXP 442
PP PPPP G K P
Sbjct: 84 PPPPPPPPPPGAKKP 98
Score = 23.4 bits (48), Expect(2) = 1.3
Identities = 8/16 (50%), Positives = 8/16 (50%)
Frame = +2
Query: 377 PPXXXRXPPXXXPPPP 424
PP PP PPPP
Sbjct: 73 PPPLCAPPPPPPPPPP 88
>SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 550
Score = 30.3 bits (65), Expect = 1.7
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = +2
Query: 377 PPXXXRXPPXXXPPPPXGXKXPFF 448
PP PP PPPP G PF+
Sbjct: 471 PPMGMYPPPRGFPPPPFGPPPPFY 494
>SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33)
Length = 457
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/37 (35%), Positives = 13/37 (35%)
Frame = +1
Query: 331 PPXPPQXXXXXFXPXXPPXXKGXPPXLXPPPXXXKXP 441
PP PP P PP PP PPP P
Sbjct: 367 PPPPPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPP 403
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/37 (35%), Positives = 13/37 (35%)
Frame = +1
Query: 331 PPXPPQXXXXXFXPXXPPXXKGXPPXLXPPPXXXKXP 441
PP PP P PP PP PPP P
Sbjct: 368 PPPPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPP 404
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/48 (33%), Positives = 16/48 (33%)
Frame = +2
Query: 299 PCSEFXKPXXGPPSRPKXXVKXXNXXPPXXXRXPPXXXPPPPXGXKXP 442
P S P PPS P PP PP PPPP P
Sbjct: 375 PPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPP 422
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/40 (35%), Positives = 14/40 (35%)
Frame = +1
Query: 331 PPXPPQXXXXXFXPXXPPXXKGXPPXLXPPPXXXKXPIFP 450
PP PP P PP PP PPP P P
Sbjct: 382 PPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPP 421
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/41 (34%), Positives = 14/41 (34%)
Frame = +2
Query: 320 PXXGPPSRPKXXVKXXNXXPPXXXRXPPXXXPPPPXGXKXP 442
P PPS P PP PP PPPP P
Sbjct: 371 PPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPP 411
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/37 (35%), Positives = 13/37 (35%)
Frame = +1
Query: 331 PPXPPQXXXXXFXPXXPPXXKGXPPXLXPPPXXXKXP 441
PP PP P PP PP PPP P
Sbjct: 369 PPPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPP 405
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/41 (31%), Positives = 14/41 (34%)
Frame = +2
Query: 320 PXXGPPSRPKXXVKXXNXXPPXXXRXPPXXXPPPPXGXKXP 442
P PP P PP + PP PPPP P
Sbjct: 370 PPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPP 410
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/37 (35%), Positives = 13/37 (35%)
Frame = +1
Query: 331 PPXPPQXXXXXFXPXXPPXXKGXPPXLXPPPXXXKXP 441
PP PP P PP PP PPP P
Sbjct: 392 PPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPPPPPPP 428
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/37 (37%), Positives = 14/37 (37%)
Frame = +1
Query: 331 PPXPPQXXXXXFXPXXPPXXKGXPPXLXPPPXXXKXP 441
PP PPQ P PP PP PPP P
Sbjct: 389 PPPPPQPPPPP-PPPPPPPPPPPPPPPPPPPAPPPPP 424
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/40 (32%), Positives = 14/40 (35%)
Frame = +1
Query: 331 PPXPPQXXXXXFXPXXPPXXKGXPPXLXPPPXXXKXPIFP 450
PP PP P PP PP PPP + P
Sbjct: 401 PPPPPPPPPPPPPPPPPPAPPPPPPPPPPPPPALRLACAP 440
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/31 (38%), Positives = 12/31 (38%)
Frame = +1
Query: 331 PPXPPQXXXXXFXPXXPPXXKGXPPXLXPPP 423
PP PP P PP PP PPP
Sbjct: 399 PPPPPPPPPPPPPPPPPPPPAPPPPPPPPPP 429
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/31 (38%), Positives = 12/31 (38%)
Frame = +1
Query: 331 PPXPPQXXXXXFXPXXPPXXKGXPPXLXPPP 423
PP PP P PP PP PPP
Sbjct: 400 PPPPPPPPPPPPPPPPPPPAPPPPPPPPPPP 430
>SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)
Length = 480
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/41 (31%), Positives = 16/41 (39%)
Frame = +2
Query: 320 PXXGPPSRPKXXVKXXNXXPPXXXRXPPXXXPPPPXGXKXP 442
P P S+P + PP P PPPP G + P
Sbjct: 341 PPPPPISKPPTSTRSAPPPPPGRAPQPLGGPPPPPPGRRPP 381
>SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)
Length = 392
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/41 (31%), Positives = 16/41 (39%)
Frame = +2
Query: 320 PXXGPPSRPKXXVKXXNXXPPXXXRXPPXXXPPPPXGXKXP 442
P P S+P + PP P PPPP G + P
Sbjct: 253 PPPPPISKPPTSTRSAPPPPPGRAPQPLGGPPPPPPGRRPP 293
>SB_34481| Best HMM Match : Extensin_2 (HMM E-Value=0.48)
Length = 341
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/31 (38%), Positives = 12/31 (38%)
Frame = +1
Query: 331 PPXPPQXXXXXFXPXXPPXXKGXPPXLXPPP 423
PP PP P PP PP PPP
Sbjct: 292 PPPPPADGSAPAPPPPPPPGGAPPPPPPPPP 322
>SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1572
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/46 (30%), Positives = 17/46 (36%), Gaps = 2/46 (4%)
Frame = +1
Query: 319 TXXGPPXPPQXXXXXFXPXX--PPXXKGXPPXLXPPPXXXKXPIFP 450
T G P P P PP G PP + PPP ++P
Sbjct: 295 TAPGYPPPQYMPHPRMRPPTRIPPPGMGPPPRIPPPPIRAPVDVYP 340
>SB_6245| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1000
Score = 28.3 bits (60), Expect = 6.9
Identities = 15/45 (33%), Positives = 16/45 (35%), Gaps = 1/45 (2%)
Frame = +1
Query: 319 TXXGPPXPPQXXXXXFXPXXPPXXKGXPPXLXP-PPXXXKXPIFP 450
T PP PP P PP PP P PP P+ P
Sbjct: 744 TTKSPPAPPLPPKVTPKPPAPPQFAPVPPPCAPIPPMPCSAPLPP 788
>SB_53865| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 919
Score = 27.9 bits (59), Expect = 9.1
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = +1
Query: 370 PXXPPXXKGXPPXLXPPPXXXKXP 441
P PP +G PP PPP + P
Sbjct: 286 PHMPPDYRGFPPPNFPPPDFSRPP 309
>SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1)
Length = 768
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = +1
Query: 331 PPXPPQXXXXXFXPXXPPXXKGXPPXLXPPP 423
PP PP P PP G PP PPP
Sbjct: 677 PPPPPPLPGGAAPPPPPPIGGGAPP--PPPP 705
>SB_15263| Best HMM Match : Jun (HMM E-Value=1.8)
Length = 315
Score = 27.9 bits (59), Expect = 9.1
Identities = 16/44 (36%), Positives = 18/44 (40%), Gaps = 4/44 (9%)
Frame = +1
Query: 331 PPXPPQXXXXXFXPXXPPXX--KGXPPXLXP--PPXXXKXPIFP 450
PP PP P PP + PP + P PP PIFP
Sbjct: 182 PPIPPIDPPRTQPPPIPPIDPPRTQPPPIPPIDPPRTQPPPIFP 225
>SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)
Length = 514
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/37 (35%), Positives = 13/37 (35%)
Frame = +2
Query: 332 PPSRPKXXVKXXNXXPPXXXRXPPXXXPPPPXGXKXP 442
PPSR PP P PPPP G P
Sbjct: 340 PPSRGAPPPPSMGMAPPPVGGAAPPPPPPPPVGGPPP 376
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,990,670
Number of Sequences: 59808
Number of extensions: 235545
Number of successful extensions: 1218
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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