Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_E13
         (737 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    30   1.5  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    30   1.5  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    30   1.5  
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ...    29   4.5  
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    28   6.0  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    28   6.0  
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ...    28   6.0  

>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/32 (40%), Positives = 13/32 (40%)
 Frame = +1

Query: 328 GPPXPPQXXXXXFXPXXPPXXKGXPPXLXPPP 423
           GPP PP        P  PP   G PP    PP
Sbjct: 712 GPPPPPGLPPITGGPPPPPPPGGLPPITGGPP 743



 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/44 (38%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
 Frame = +1

Query: 328 GPPXPPQXXXXXFXPXXPPXX---KGXPPXLXPPPXXXKXPIFP 450
           GPP PP        P  PP     KG PP   PPP     P+ P
Sbjct: 757 GPPPPPPPPGGCPPPPPPPPPGGFKGGPP--PPPPPGMFAPMAP 798


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/32 (40%), Positives = 13/32 (40%)
 Frame = +1

Query: 328 GPPXPPQXXXXXFXPXXPPXXKGXPPXLXPPP 423
           GPP PP        P  PP   G PP    PP
Sbjct: 712 GPPPPPGLPPITGGPPPPPPPGGLPPITGGPP 743



 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/44 (38%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
 Frame = +1

Query: 328 GPPXPPQXXXXXFXPXXPPXX---KGXPPXLXPPPXXXKXPIFP 450
           GPP PP        P  PP     KG PP   PPP     P+ P
Sbjct: 757 GPPPPPPPPGGCPPPPPPPPPGGFKGGPP--PPPPPGMFAPMAP 798


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/32 (40%), Positives = 13/32 (40%)
 Frame = +1

Query: 328 GPPXPPQXXXXXFXPXXPPXXKGXPPXLXPPP 423
           GPP PP        P  PP   G PP    PP
Sbjct: 295 GPPPPPGLPPITGGPPPPPPPGGLPPITGGPP 326



 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/44 (38%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
 Frame = +1

Query: 328 GPPXPPQXXXXXFXPXXPPXX---KGXPPXLXPPPXXXKXPIFP 450
           GPP PP        P  PP     KG PP   PPP     P+ P
Sbjct: 340 GPPPPPPPPGGCPPPPPPPPPGGFKGGPP--PPPPPGMFAPMAP 381


>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
           protein Y48G9A.4 protein.
          Length = 1115

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/37 (35%), Positives = 13/37 (35%)
 Frame = +1

Query: 331 PPXPPQXXXXXFXPXXPPXXKGXPPXLXPPPXXXKXP 441
           PP P         P  PP   G PP   PPP     P
Sbjct: 566 PPLPQNLSGAPPPPPPPPPMLGGPPPPPPPPGGLMGP 602


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/40 (30%), Positives = 14/40 (35%)
 Frame = +1

Query: 331 PPXPPQXXXXXFXPXXPPXXKGXPPXLXPPPXXXKXPIFP 450
           PP P         P  PP      P + PPP   + P  P
Sbjct: 336 PPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPPAPP 375


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/40 (30%), Positives = 14/40 (35%)
 Frame = +1

Query: 331 PPXPPQXXXXXFXPXXPPXXKGXPPXLXPPPXXXKXPIFP 450
           PP P         P  PP      P + PPP   + P  P
Sbjct: 346 PPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPPAPP 385


>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
            protein F59E12.9 protein.
          Length = 1621

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/40 (32%), Positives = 15/40 (37%)
 Frame = +1

Query: 328  GPPXPPQXXXXXFXPXXPPXXKGXPPXLXPPPXXXKXPIF 447
            G P PP+          PP   G PP    PP     P+F
Sbjct: 1466 GGPPPPRGMNSPMRGMPPPMRGGGPPMRGGPPMRGGPPMF 1505


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,275,116
Number of Sequences: 27780
Number of extensions: 216198
Number of successful extensions: 1345
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 942
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)