Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_E12
         (934 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g47930.1 68418.m05921 40S ribosomal protein S27 (RPS27D)           137   8e-33
At3g61110.1 68416.m06839 40S ribosomal protein S27 (ARS27A) iden...   134   8e-32
At2g45710.1 68415.m05685 40S ribosomal protein S27 (RPS27A)           128   4e-30
At2g44870.1 68415.m05586 expressed protein                             30   1.9  
At3g56410.2 68416.m06274 expressed protein                             28   7.7  

>At5g47930.1 68418.m05921 40S ribosomal protein S27 (RPS27D)
          Length = 84

 Score =  137 bits (332), Expect = 8e-33
 Identities = 59/78 (75%), Positives = 65/78 (83%)
 Frame = +2

Query: 113 IDLLHPSPASEXRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILC 292
           IDLLHP P  E RKHKLKRLV  PNS+FMDVKC GC+ ITTVFSH+Q VVVC  C T+LC
Sbjct: 7   IDLLHPPPELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLC 66

Query: 293 QPTGGRARLTEGCSFRRK 346
           QPTGG+ARL EGCSFR+K
Sbjct: 67  QPTGGKARLQEGCSFRKK 84


>At3g61110.1 68416.m06839 40S ribosomal protein S27 (ARS27A)
           identical to cDNA ribosomal protein S27 (ARS27A)
           GI:4193381
          Length = 86

 Score =  134 bits (324), Expect = 8e-32
 Identities = 59/78 (75%), Positives = 65/78 (83%)
 Frame = +2

Query: 113 IDLLHPSPASEXRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILC 292
           IDLL+P    E RKHKLKRLV  PNS+FMDVKC GC+ ITTVFSH+Q VVVC  C TILC
Sbjct: 7   IDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTILC 66

Query: 293 QPTGGRARLTEGCSFRRK 346
           QPTGG+A+LTEGCSFRRK
Sbjct: 67  QPTGGKAKLTEGCSFRRK 84


>At2g45710.1 68415.m05685 40S ribosomal protein S27 (RPS27A)
          Length = 84

 Score =  128 bits (310), Expect = 4e-30
 Identities = 55/78 (70%), Positives = 64/78 (82%)
 Frame = +2

Query: 113 IDLLHPSPASEXRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILC 292
           IDLL+P    E RKHKLKRLV  PNS+FMDVKC GC+ ITTVFSH+Q VV+C  C T+LC
Sbjct: 7   IDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGNCQTLLC 66

Query: 293 QPTGGRARLTEGCSFRRK 346
            PTGG+A+LTEGCSFR+K
Sbjct: 67  TPTGGKAKLTEGCSFRKK 84


>At2g44870.1 68415.m05586 expressed protein
          Length = 248

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +2

Query: 185 NSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILCQPTG 304
           N++ +  +CP C +      +  +++ C GC  I+ QP G
Sbjct: 175 NNFVIKGECPACKR--QFIGYKNQIIRCEGCGNIVWQPQG 212


>At3g56410.2 68416.m06274 expressed protein
          Length = 1535

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
 Frame = +2

Query: 98  PCPLAIDLLHPSPAS-EXRKHKLK----RLVPHPNSYFMDVKCPGCYKITTVFSHAQRVV 262
           P P  + ++    AS +  KH  +    R VP  +S    V+CP C+K+      A    
Sbjct: 27  PSPRLLSIIRSKLASSKDLKHMFRGMRSRTVPGLSSQSRIVRCPKCHKLLQEPLDATS-Y 85

Query: 263 VCAGCSTIL 289
            C GC +IL
Sbjct: 86  KCGGCDSIL 94


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,587,594
Number of Sequences: 28952
Number of extensions: 230154
Number of successful extensions: 517
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2227127592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)