Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_E08
         (1122 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38223| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.8  
SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1)                 29   6.8  
SB_19519| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   9.0  
SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)                   29   9.0  
SB_34481| Best HMM Match : Extensin_2 (HMM E-Value=0.48)               29   9.0  

>SB_38223| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 201

 Score = 29.1 bits (62), Expect = 6.8
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = +1

Query: 865 PPPPPXWEXXXPPPP 909
           PPPPP  E   PPPP
Sbjct: 93  PPPPPQLENDFPPPP 107


>SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1)
          Length = 305

 Score = 29.1 bits (62), Expect = 6.8
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = +1

Query: 865 PPPPPXWEXXXPPPP 909
           PPPPP  E   PPPP
Sbjct: 205 PPPPPILELAAPPPP 219


>SB_19519| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 401

 Score = 28.7 bits (61), Expect = 9.0
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +3

Query: 867 PPPPXVGKXXPPPP 908
           PPPP +G   PPPP
Sbjct: 203 PPPPPIGAPPPPPP 216


>SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)
          Length = 514

 Score = 28.7 bits (61), Expect = 9.0
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = +3

Query: 867 PPPPXVGKXXPPPP 908
           PPPP VG   PPPP
Sbjct: 366 PPPPPVGGPPPPPP 379


>SB_34481| Best HMM Match : Extensin_2 (HMM E-Value=0.48)
          Length = 341

 Score = 28.7 bits (61), Expect = 9.0
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = +1

Query: 865 PPPPPXWEXXXPPPPXXKXXXGGG 936
           PPPPP      PPPP       GG
Sbjct: 306 PPPPPGGAPPPPPPPPPPPPGDGG 329


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,045,604
Number of Sequences: 59808
Number of extensions: 242415
Number of successful extensions: 1705
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1232
length of database: 16,821,457
effective HSP length: 83
effective length of database: 11,857,393
effective search space used: 3438643970
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)