Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_E08
         (1122 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92831-7|CAB07369.2| 2396|Caenorhabditis elegans Hypothetical pr...    29   6.0  
Z81066-8|CAB02974.2| 2396|Caenorhabditis elegans Hypothetical pr...    29   6.0  
U41021-1|AAA82333.1|  481|Caenorhabditis elegans Mechanosensory ...    29   6.0  
U26736-1|AAA87552.1|  481|Caenorhabditis elegans MEC-2 protein.        29   6.0  
U26735-1|AAA87551.1|  481|Caenorhabditis elegans MEC-2 protein.        29   6.0  
U41031-3|AAA82620.1|  164|Caenorhabditis elegans Hypothetical pr...    29   7.9  

>Z92831-7|CAB07369.2| 2396|Caenorhabditis elegans Hypothetical protein
            F22G12.5 protein.
          Length = 2396

 Score = 29.1 bits (62), Expect = 6.0
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = +3

Query: 867  PPPPXVGKXXPPPP 908
            PPPP  GK  PPPP
Sbjct: 1509 PPPPASGKTIPPPP 1522


>Z81066-8|CAB02974.2| 2396|Caenorhabditis elegans Hypothetical protein
            F22G12.5 protein.
          Length = 2396

 Score = 29.1 bits (62), Expect = 6.0
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = +3

Query: 867  PPPPXVGKXXPPPP 908
            PPPP  GK  PPPP
Sbjct: 1509 PPPPASGKTIPPPP 1522


>U41021-1|AAA82333.1|  481|Caenorhabditis elegans Mechanosensory
           abnormality protein2, isoform a protein.
          Length = 481

 Score = 29.1 bits (62), Expect = 6.0
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = -2

Query: 908 GGGGXXFSHXGGGGG 864
           GGGG   SH GGGGG
Sbjct: 404 GGGGHGHSHGGGGGG 418


>U26736-1|AAA87552.1|  481|Caenorhabditis elegans MEC-2 protein.
          Length = 481

 Score = 29.1 bits (62), Expect = 6.0
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = -2

Query: 908 GGGGXXFSHXGGGGG 864
           GGGG   SH GGGGG
Sbjct: 404 GGGGHGHSHGGGGGG 418


>U26735-1|AAA87551.1|  481|Caenorhabditis elegans MEC-2 protein.
          Length = 481

 Score = 29.1 bits (62), Expect = 6.0
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = -2

Query: 908 GGGGXXFSHXGGGGG 864
           GGGG   SH GGGGG
Sbjct: 404 GGGGHGHSHGGGGGG 418


>U41031-3|AAA82620.1|  164|Caenorhabditis elegans Hypothetical
           protein C16B8.3 protein.
          Length = 164

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 755 GVFPPPXFXXXPPPPPXXF 811
           G++PPP     PPPPP  +
Sbjct: 139 GMYPPPPTGQYPPPPPGQY 157


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,428,775
Number of Sequences: 27780
Number of extensions: 253156
Number of successful extensions: 1647
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1209
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3025992820
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)