Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_E08
         (1122 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g18810.1 68416.m02389 protein kinase family protein contains ...    29   4.2  
At4g18570.1 68417.m02749 proline-rich family protein common fami...    29   5.6  
At4g03120.1 68417.m00425 proline-rich family protein similar to ...    29   5.6  
At5g25590.1 68418.m03045 expressed protein contains Pfam profile...    29   7.4  
At4g33970.1 68417.m04820 leucine-rich repeat family protein / ex...    29   7.4  
At4g27850.1 68417.m03999 proline-rich family protein contains pr...    29   7.4  
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex...    29   7.4  
At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family...    29   7.4  
At3g15000.1 68416.m01897 expressed protein similar to DAG protei...    28   9.8  
At1g59910.1 68414.m06749 formin homology 2 domain-containing pro...    28   9.8  

>At3g18810.1 68416.m02389 protein kinase family protein contains
           Pfam PF00069: Protein kinase domain
          Length = 700

 Score = 29.5 bits (63), Expect = 4.2
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +1

Query: 865 PPPPPXWEXXXPPPP 909
           PPPP  W+   PPPP
Sbjct: 269 PPPPGSWQPSPPPPP 283


>At4g18570.1 68417.m02749 proline-rich family protein common family
           members: At3g25690, At4g04980, At5g61090 [Arabidopsis
           thaliana]
          Length = 642

 Score = 29.1 bits (62), Expect = 5.6
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = +3

Query: 867 PPPPXVGKXXPPPP 908
           PPPP V K  PPPP
Sbjct: 325 PPPPSVSKAPPPPP 338


>At4g03120.1 68417.m00425 proline-rich family protein similar to U1
           small nuclear ribonucleoprotein C; contains proline rich
           extensin domains, INTERPRO:IPR002965
          Length = 207

 Score = 29.1 bits (62), Expect = 5.6
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 749 GRGVFPPPXFXXXPPPPP 802
           G+G  PPP +   PPPPP
Sbjct: 158 GQGGGPPPNYNGLPPPPP 175


>At5g25590.1 68418.m03045 expressed protein contains Pfam profile
           PF04783: Protein of unknown function (DUF630)
          Length = 775

 Score = 28.7 bits (61), Expect = 7.4
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = +1

Query: 865 PPPPPXWEXXXPPPP 909
           PPPPP  E   PPPP
Sbjct: 90  PPPPPPIENLPPPPP 104


>At4g33970.1 68417.m04820 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 699

 Score = 28.7 bits (61), Expect = 7.4
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +1

Query: 865 PPPPPXWEXXXPPPP 909
           PPPPP +    PPPP
Sbjct: 550 PPPPPVYSPPPPPPP 564


>At4g27850.1 68417.m03999 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 577

 Score = 28.7 bits (61), Expect = 7.4
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +1

Query: 865 PPPPPXWEXXXPPPPXXKXXXG 930
           PPPPP +    PPPP      G
Sbjct: 164 PPPPPPYPSPLPPPPSPSPTPG 185


>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 760

 Score = 28.7 bits (61), Expect = 7.4
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +1

Query: 865 PPPPPXWEXXXPPPP 909
           PPPPP +    PPPP
Sbjct: 443 PPPPPVYSPPPPPPP 457



 Score = 28.7 bits (61), Expect = 7.4
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +1

Query: 865 PPPPPXWEXXXPPPP 909
           PPPPP +    PPPP
Sbjct: 458 PPPPPVYSPPPPPPP 472



 Score = 28.7 bits (61), Expect = 7.4
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +1

Query: 865 PPPPPXWEXXXPPPP 909
           PPPPP +    PPPP
Sbjct: 489 PPPPPVYSPPPPPPP 503



 Score = 28.7 bits (61), Expect = 7.4
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = +1

Query: 865 PPPPPXWEXXXPPPP 909
           PPPPP  E   PPPP
Sbjct: 619 PPPPPCIEYSPPPPP 633


>At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family
           protein Common family members: At4g18570, At4g04980,
           At5g61090 [Arabidopsis thaliana];  identical to cDNA
           CHUP1 for actin binding protein GI:28071264
          Length = 1004

 Score = 28.7 bits (61), Expect = 7.4
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = +1

Query: 865 PPPPPXWEXXXPPPPXXKXXXGGG 936
           PPPPP      PPPP      G G
Sbjct: 690 PPPPPGGGPPPPPPPPGALGRGAG 713


>At3g15000.1 68416.m01897 expressed protein similar to DAG protein
           (required for chloroplast differentiation and palisade
           development) GB:Q38732 [Antirrhinum majus]
          Length = 395

 Score = 28.3 bits (60), Expect = 9.8
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +3

Query: 867 PPPPXVGKXXPPPP 908
           PPPP +G   PPPP
Sbjct: 252 PPPPHIGGSAPPPP 265


>At1g59910.1 68414.m06749 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02128
          Length = 929

 Score = 28.3 bits (60), Expect = 9.8
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = +1

Query: 865 PPPPPXWEXXXPPPPXXKXXXGGG 936
           PPPPP      PPPP      G G
Sbjct: 397 PPPPPKKGPAAPPPPPPPGKKGAG 420


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,841,353
Number of Sequences: 28952
Number of extensions: 227060
Number of successful extensions: 4137
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2996
length of database: 12,070,560
effective HSP length: 82
effective length of database: 9,696,496
effective search space used: 2821680336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)