Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_E07
         (890 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A11.04 |||siepin homolog|Schizosaccharomyces pombe|chr 1|||...    28   1.6  
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    27   2.7  
SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha sub...    26   6.3  
SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces p...    26   6.3  
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    26   8.3  

>SPAC3A11.04 |||siepin homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 236

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -2

Query: 808 WAPRLHGLRWRPYLHQVS 755
           +A +LHG+RW  Y H+VS
Sbjct: 184 FASKLHGMRWFMYTHKVS 201


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +1

Query: 553 TTEFTSRSCPPRTNST*SSITRKVLVMTVSSTVIAPLTPSNTTGTLSP 696
           +T  TS   PP T+   ++ T        ++T + P T  NTT T +P
Sbjct: 63  STNITSIVPPPSTSHNSTTTTVPPTTSMNTTTTVPPTTSLNTTTTTAP 110



 Score = 27.1 bits (57), Expect = 3.6
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = +1

Query: 565 TSRSCPPRT--NST*SSITRKVLVMTVSSTVIAPLTPSNTTGTLSPSMYESXVMF 723
           T+ + PP T  NST + +     V T  +TV+ P T  NTT  + P+ + +   F
Sbjct: 105 TTTTAPPTTHVNSTTTVVPPTTHVNT--TTVVPPTTHVNTTTVVPPTTHANTTSF 157


>SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha
           subunit Pda1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -1

Query: 677 VFEGVSGAITVDDTVIT 627
           V  G+ GAIT+DD++IT
Sbjct: 117 VAAGIEGAITLDDSIIT 133


>SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 417

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 16/71 (22%), Positives = 30/71 (42%)
 Frame = -1

Query: 320 MVFLLPFSIRRFTASLITXPXFXFRYSEHLAIAXXYSPMTTXIYSCSASTXSVLGASVAL 141
           M F    ++   T   +  P   FR+  HL      S +T+ +Y+ +  T     ++++ 
Sbjct: 1   MRFFETLALALLTTGALAAP---FRHPHHLLNKRDVSVVTSKVYAYTTVTLEAAASAIST 57

Query: 140 EASAHTARTKA 108
             +A  A T A
Sbjct: 58  NGAAKEAATAA 68


>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
           Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 422 LINKRDHHALKLIDQQNHNKIAFGDSKDKTS 514
           L+ K+D  A K+ DQ  H K+     +DK S
Sbjct: 496 LLTKKDSIANKISDQSEHLKVLEDVQRDKVS 526


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,188,020
Number of Sequences: 5004
Number of extensions: 62135
Number of successful extensions: 212
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)