Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_E07
         (890 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46258| Best HMM Match : Vicilin_N (HMM E-Value=4.7)                 30   2.9  
SB_19950| Best HMM Match : AIP3 (HMM E-Value=1.7)                      29   3.8  

>SB_46258| Best HMM Match : Vicilin_N (HMM E-Value=4.7)
          Length = 406

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +2

Query: 467 QNHNKIAFGDSKDKTSKKVSWKFTPXVGKQQSLLQDHVHRGQ 592
           +   K+ + D++DK  +K++W  T   G+Q+    D   +GQ
Sbjct: 9   KRRQKMTWDDTRDKRRQKMTWDDTQDEGRQKMTRDDMWDKGQ 50


>SB_19950| Best HMM Match : AIP3 (HMM E-Value=1.7)
          Length = 427

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 5/64 (7%)
 Frame = +3

Query: 504 TKPARKSPGSLPPXLENNRVYFKIMSTEDKQY-----LKLDNTKGSSDDRIIYGDSTADT 668
           TKP R SPG+ PP + N+     ++S  +K Y      K       SDD ++ G S    
Sbjct: 118 TKP-RSSPGAYPPTMRNSYSLDDVVSALEKSYETGVQFKDYLPSMESDDSLLQGSSVTSV 176

Query: 669 FKHH 680
              H
Sbjct: 177 DSAH 180


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,689,729
Number of Sequences: 59808
Number of extensions: 496598
Number of successful extensions: 1277
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1277
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2550281014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)