Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_E07
         (890 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    25   1.2  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   4.9  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   8.6  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = +2

Query: 344 TKDGKEIVKSYFPIQFRVIFTEQTVKLINKRDHHALKLIDQQNHNKIA 487
           T + K+I K   P + ++I     V ++   DH    L+D   +  IA
Sbjct: 124 TMENKDITKRPLPNESQLIKRHPIVTIMGHVDHGKTTLLDALRNTSIA 171


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 12/52 (23%), Positives = 19/52 (36%)
 Frame = +1

Query: 640 SSTVIAPLTPSNTTGTLSPSMYESXVMFFVYNREYNSVMTLDEDMAANEDRE 795
           SS ++ P++P      +SP   E       +  EY      D     N+  E
Sbjct: 315 SSGILTPVSPYGYVKPISPEQEELIHRLVYFQNEYEQPSEEDLKRITNQPSE 366


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +2

Query: 533 FTPXVGKQQSLLQDHVHRGQTVPEAR*HERF 625
           +T    + Q ++Q HV    T+PE +   RF
Sbjct: 380 YTCHAVRNQDVVQTHVLTIHTIPEVKVTPRF 410


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,204
Number of Sequences: 438
Number of extensions: 4733
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28783482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)