Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_E03
         (903 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces...    85   2e-17
SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein L15b|Schizos...    85   2e-17
SPAC11H11.03c |||SMR and DUF1771 domain protein|Schizosaccharomy...    27   3.6  
SPBC19F5.01c |puc1|SPBP8B7.32c|cyclin Puc1|Schizosaccharomyces p...    27   3.6  
SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharom...    26   6.4  
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy...    26   6.4  

>SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 201

 Score = 84.6 bits (200), Expect = 2e-17
 Identities = 45/109 (41%), Positives = 54/109 (49%)
 Frame = +3

Query: 141 RXKLXAVMRFLLRVRVWQYRQLXRMHRAPRPTRPDKARXLGYRAKQXXXXXXXXXXXXXX 320
           + K   V  FL RVR W+YRQ+  +HRA RP+RPDKAR LGY+AKQ              
Sbjct: 12  KKKQSDVNLFLSRVRAWEYRQMNVIHRASRPSRPDKARRLGYKAKQGYVIYRIRVRRGGR 71

Query: 321 XXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYW 467
                   TYGKP   GVN LK  R+ +  AEE            +SYW
Sbjct: 72  KRPVPKGQTYGKPVHQGVNHLKYQRSARCTAEERVGRYCSNLRVLNSYW 120



 Score = 38.7 bits (86), Expect = 0.001
 Identities = 16/18 (88%), Positives = 16/18 (88%)
 Frame = +2

Query: 506 ILVDPSHKAIRRDPXIXW 559
           ILVDPSHKAIRRDP I W
Sbjct: 133 ILVDPSHKAIRRDPRINW 150


>SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein
           L15b|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 201

 Score = 84.6 bits (200), Expect = 2e-17
 Identities = 45/109 (41%), Positives = 54/109 (49%)
 Frame = +3

Query: 141 RXKLXAVMRFLLRVRVWQYRQLXRMHRAPRPTRPDKARXLGYRAKQXXXXXXXXXXXXXX 320
           + K   V  FL RVR W+YRQ+  +HRA RP+RPDKAR LGY+AKQ              
Sbjct: 12  KKKQSDVNLFLSRVRAWEYRQMNVIHRASRPSRPDKARRLGYKAKQGYVIYRIRVRRGGR 71

Query: 321 XXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYW 467
                   TYGKP   GVN LK  R+ +  AEE            +SYW
Sbjct: 72  KRPVPKGQTYGKPVHQGVNHLKYQRSARCTAEERVGRYCSNLRVLNSYW 120



 Score = 38.7 bits (86), Expect = 0.001
 Identities = 16/18 (88%), Positives = 16/18 (88%)
 Frame = +2

Query: 506 ILVDPSHKAIRRDPXIXW 559
           ILVDPSHKAIRRDP I W
Sbjct: 133 ILVDPSHKAIRRDPRINW 150


>SPAC11H11.03c |||SMR and DUF1771 domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 206

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 474 CNPSKSSTHGDHRNDGQHAPQQWIEGC 394
           CNP +   HG + ++   A QQ IE C
Sbjct: 70  CNPDEIDLHGLYIDEAVQAVQQRIENC 96


>SPBC19F5.01c |puc1|SPBP8B7.32c|cyclin Puc1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 359

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 11/44 (25%), Positives = 22/44 (50%)
 Frame = +2

Query: 428 PSLRWSPCVELLLGLHKILHTSISXFILVDPSHKAIRRDPXIXW 559
           P+L   P  ++   +  I++  +  F+L  PS ++ R+D    W
Sbjct: 253 PNLFKFPASKIACSVMNIVNEHVGSFLLTHPSMESYRKDDNFLW 296


>SPAC31G5.15 |||phosphatidylserine decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 980

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 13/52 (25%), Positives = 22/52 (42%)
 Frame = -2

Query: 188 DPHTQQKTHNSAQFXPRQRLKKRLEATQTEQPVADGARGPTGKPVKAKVXKE 33
           DP T   + N     P Q    + E + T Q +AD      GK ++  + ++
Sbjct: 382 DPETGLYSFNIETSSPSQDTSSKAEDSPTVQKIADDFSSAVGKDLRTDIIEQ 433


>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 6/59 (10%)
 Frame = -2

Query: 191 PDPHTQQKTHNSAQFXPRQRLKKRLEA--TQTEQPV---AD-GARGPTGKPVKAKVXKE 33
           P   TQQ T NSA   P        EA  T+ EQ +   +D G R  + KP +A    E
Sbjct: 304 PQQTTQQGTQNSANAEPSSSASVPAEAPETEAEQSIDVSSDIGLRSDSSKPNEAPTSSE 362


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,096,390
Number of Sequences: 5004
Number of extensions: 35537
Number of successful extensions: 85
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)