Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_E03
         (903 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0257 + 11145558-11145876,11148181-11148347,11149114-111493...    89   4e-18
03_05_0228 - 22137771-22138016,22138109-22138306,22138852-221390...    89   4e-18
03_05_0826 - 27994004-27994966,27995053-27996030,27996101-27996478     30   2.2  
05_02_0037 + 5883285-5884292                                           30   2.9  
01_01_0294 + 2413352-2413686,2414796-2414932,2415456-2415499           29   6.7  
09_04_0047 - 14139706-14140140,14140234-14140636,14141028-141412...    28   8.8  

>05_03_0257 +
           11145558-11145876,11148181-11148347,11149114-11149311,
           11149405-11149650
          Length = 309

 Score = 89.0 bits (211), Expect = 4e-18
 Identities = 47/109 (43%), Positives = 55/109 (50%)
 Frame = +3

Query: 141 RXKLXAVMRFLLRVRVWQYRQLXRMHRAPRPTRPDKARXLGYRAKQXXXXXXXXXXXXXX 320
           R K   VMRF+ RVR W+YRQ   + R  RPTRPDKAR LGY+AKQ              
Sbjct: 117 RRKQSDVMRFVQRVRCWEYRQQPAIVRLTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGR 176

Query: 321 XXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYW 467
                    YGKPK  G+ QLK  RN +S+AEE            +SYW
Sbjct: 177 KRPVPKGIVYGKPKHQGITQLKFQRNKRSVAEERAGRKLGGLRVLNSYW 225



 Score = 29.9 bits (64), Expect = 2.9
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = +2

Query: 506 ILVDPSHKAIRRDPXIXW 559
           ILVD +H AIR DP I W
Sbjct: 238 ILVDVAHSAIRNDPRINW 255


>03_05_0228 -
           22137771-22138016,22138109-22138306,22138852-22139018,
           22139129-22139132
          Length = 204

 Score = 89.0 bits (211), Expect = 4e-18
 Identities = 47/109 (43%), Positives = 55/109 (50%)
 Frame = +3

Query: 141 RXKLXAVMRFLLRVRVWQYRQLXRMHRAPRPTRPDKARXLGYRAKQXXXXXXXXXXXXXX 320
           R K   VMRF+ RVR W+YRQ   + R  RPTRPDKAR LGY+AKQ              
Sbjct: 12  RRKQSDVMRFVQRVRCWEYRQQPAIVRLTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGR 71

Query: 321 XXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYW 467
                    YGKPK  G+ QLK  RN +S+AEE            +SYW
Sbjct: 72  KRPVPKGIVYGKPKHQGITQLKFQRNKRSVAEERAGRKLGGLRVLNSYW 120



 Score = 29.9 bits (64), Expect = 2.9
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = +2

Query: 506 ILVDPSHKAIRRDPXIXW 559
           ILVD +H AIR DP I W
Sbjct: 133 ILVDVAHSAIRNDPRINW 150


>03_05_0826 - 27994004-27994966,27995053-27996030,27996101-27996478
          Length = 772

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = -2

Query: 407 GLKVARGLQLVDTMALGLAISGTLSNWTLAATTSHTDSE 291
           G +V  G++ V  +ALGL ++GT   W L   T  +D++
Sbjct: 591 GSEVPLGVEKVHELALGLELAGTRFLWALRKPTGVSDAD 629


>05_02_0037 + 5883285-5884292
          Length = 335

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
 Frame = +2

Query: 191 AVPSVXSYAPRSQAHKAGQSPKXXLP---C*TRLCCIQNPCATWWPQASSC*GC 343
           AV    + AP ++  +A +SP        C  R CC  +P + WWP+     GC
Sbjct: 271 AVFPTEAAAPATEGKEAAKSPDAAAQGGWCLFR-CCWPSPPSVWWPRCGCGGGC 323


>01_01_0294 + 2413352-2413686,2414796-2414932,2415456-2415499
          Length = 171

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 18/69 (26%), Positives = 29/69 (42%)
 Frame = +1

Query: 13  PASXLGPSXHTFAFTGXPVGPRAPSATGCSVWVASSLFFRRCLGXNXALLCVFCCVCGSG 192
           P   L  + +  A +G  +G    +  G SVWVA +   RR  G       +   +   G
Sbjct: 47  PGGLLADTFYRLALSGTFLG--GMTLVGASVWVADNPAARRAAGKKLLYTAIPPLLAAMG 104

Query: 193 STVSXLVCT 219
            +V  L+C+
Sbjct: 105 LSVVALLCS 113


>09_04_0047 -
           14139706-14140140,14140234-14140636,14141028-14141272,
           14141341-14141576,14141651-14141939
          Length = 535

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = +1

Query: 19  SXLGPSXHTFAFTGXPVGPRAPSATGCSVWVASSLFFRRCLGXNXALL 162
           S  GP  H F       G R PSA G + ++  +   R C+G   AL+
Sbjct: 442 SIWGPDAHEFRPERFAPGARRPSAAGAARFLPFAAGPRNCVGQAYALV 489


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,544,258
Number of Sequences: 37544
Number of extensions: 295332
Number of successful extensions: 700
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2553813320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)