Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_E03
         (903 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46389| Best HMM Match : No HMM Matches (HMM E-Value=.)             103   3e-22
SB_48401| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.96 
SB_640| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   3.9  

>SB_46389| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 204

 Score =  103 bits (246), Expect = 3e-22
 Identities = 52/109 (47%), Positives = 63/109 (57%)
 Frame = +3

Query: 141 RXKLXAVMRFLLRVRVWQYRQLXRMHRAPRPTRPDKARXLGYRAKQXXXXXXXXXXXXXX 320
           + K   ++RFLLRVR WQYRQL  +HRA RPTRPDKAR LGY+AKQ              
Sbjct: 12  KKKQSDLLRFLLRVRCWQYRQLTAIHRATRPTRPDKARRLGYKAKQGFVIYRVRVRRGGR 71

Query: 321 XXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYW 467
                  ATYGKP + GVN+LK  R+L+S+AEE            +SYW
Sbjct: 72  KRPVPKGATYGKPVNQGVNELKFQRSLRSVAEERAGRYCGGLRVLNSYW 120



 Score = 32.3 bits (70), Expect = 0.55
 Identities = 13/18 (72%), Positives = 14/18 (77%)
 Frame = +2

Query: 506 ILVDPSHKAIRRDPXIXW 559
           I+VDP HKAIRRD  I W
Sbjct: 133 IMVDPFHKAIRRDARINW 150


>SB_48401| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 694

 Score = 31.5 bits (68), Expect = 0.96
 Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
 Frame = -2

Query: 218 VHTXQLTVLPDPHTQQ---KTHNSAQFXPRQRLKKRLEATQTEQPVADGARGPTGKPVKA 48
           V T  + +LPDPH QQ   + HN A+   +Q+ KK  + +               KPV+ 
Sbjct: 586 VFTELVDLLPDPHKQQELLQAHNDAKALAKQQGKKITKDSSKRNNAWVARPEQQAKPVQR 645

Query: 47  KVXKEGPRXEA 15
           +V    P   A
Sbjct: 646 QVPSHPPGLSA 656


>SB_640| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 917

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 13/55 (23%), Positives = 26/55 (47%)
 Frame = -2

Query: 197 VLPDPHTQQKTHNSAQFXPRQRLKKRLEATQTEQPVADGARGPTGKPVKAKVXKE 33
           ++P P  + +THN  +F   +RL+  L+    +    D   G   +P + +  K+
Sbjct: 437 IIPPPRHRTETHNDEKFNVEERLRSLLDVAADDFSDDDDDDGDDFEPKREETFKQ 491


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,244,109
Number of Sequences: 59808
Number of extensions: 321390
Number of successful extensions: 795
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 793
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2597949818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)