Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_E03
         (903 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88168-3|AAC24397.1|  204|Caenorhabditis elegans Ribosomal prote...   101   9e-22
AL132943-1|CAC14390.1| 1042|Caenorhabditis elegans Hypothetical ...    30   2.6  
U46675-3|AAB52643.1|  375|Caenorhabditis elegans Activated in bl...    28   7.9  
AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    28   7.9  

>U88168-3|AAC24397.1|  204|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 15 protein.
          Length = 204

 Score =  101 bits (241), Expect = 9e-22
 Identities = 48/109 (44%), Positives = 60/109 (55%)
 Frame = +3

Query: 141 RXKLXAVMRFLLRVRVWQYRQLXRMHRAPRPTRPDKARXLGYRAKQXXXXXXXXXXXXXX 320
           R K    +R+LLR+R W YRQL  +HR PRPTRP+KAR LGYRAKQ              
Sbjct: 12  RKKQSDALRYLLRIRTWHYRQLSAVHRVPRPTRPEKARRLGYRAKQGFVVYRVRVRRGNR 71

Query: 321 XXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYW 467
                   TYGKPK+HGVN+LK  ++ Q++AE             +SYW
Sbjct: 72  KRPVCKGQTYGKPKTHGVNELKNAKSKQAVAEGRAGRRLGSLRVLNSYW 120



 Score = 31.5 bits (68), Expect = 0.85
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +2

Query: 506 ILVDPSHKAIRRDPXIXW 559
           +L+DP HKAIRR+P   W
Sbjct: 133 VLIDPFHKAIRRNPDTQW 150


>AL132943-1|CAC14390.1| 1042|Caenorhabditis elegans Hypothetical
            protein Y116F11B.3 protein.
          Length = 1042

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 19/46 (41%), Positives = 27/46 (58%)
 Frame = -2

Query: 407  GLKVARGLQLVDTMALGLAISGTLSNWTLAATTSHTDSEYNITLFS 270
            GLKVAR   LVD   +G+ + G ++  T  ATT+   + Y  TL+S
Sbjct: 972  GLKVAR--DLVD-QNIGVWLGGQVNITTTTATTTSNSTSYPSTLYS 1014


>U46675-3|AAB52643.1|  375|Caenorhabditis elegans Activated in
           blocked unfolded proteinresponse protein 10 protein.
          Length = 375

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 19/51 (37%), Positives = 22/51 (43%)
 Frame = +2

Query: 293 QNPCATWWPQASSC*GCHLWQAQEPWCQPVEAHAQPSIHC*GACWPSLRWS 445
           QNPCA    Q S    C   Q  +P  Q     AQP   C  AC P+ + S
Sbjct: 275 QNPCACQQAQPS----CDCAQQAQPTFQVQVQQAQPINQCVPACQPACQSS 321


>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 17/58 (29%), Positives = 22/58 (37%)
 Frame = -1

Query: 471 NPSKSSTHGDHRNDGQHAPQQWIEGCAWASTG*HHGSWACHKWHP*QLDACGHHVAHG 298
           +P+    HG+H +   H         A A  G HHG    H  H     +  HH  HG
Sbjct: 451 SPAHHGHHGEHHHAPAHHGHHGEHHHAPAHHG-HHGEHGTHHGHHGSHHSPAHHGHHG 507



 Score = 28.3 bits (60), Expect = 7.9
 Identities = 16/57 (28%), Positives = 22/57 (38%)
 Frame = -1

Query: 471 NPSKSSTHGDHRNDGQHAPQQWIEGCAWASTG*HHGSWACHKWHP*QLDACGHHVAH 301
           +P+    HG+H +   H       G      G HH + A H  H       GHH +H
Sbjct: 499 SPAHHGHHGEHHHAPAHHGHHGEHGTHHGHHGEHHHAPAHHGHHGEHGTHHGHHGSH 555


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,162,049
Number of Sequences: 27780
Number of extensions: 225202
Number of successful extensions: 679
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 674
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2297313942
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)