Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_E03
         (903 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g17390.1 68417.m02606 60S ribosomal protein L15 (RPL15B)            87   2e-17
At4g16720.1 68417.m02526 60S ribosomal protein L15 (RPL15A)            87   2e-17
At5g54770.1 68418.m06822 thiazole biosynthetic enzyme, chloropla...    28   9.7  

>At4g17390.1 68417.m02606 60S ribosomal protein L15 (RPL15B)
          Length = 204

 Score = 86.6 bits (205), Expect = 2e-17
 Identities = 47/109 (43%), Positives = 55/109 (50%)
 Frame = +3

Query: 141 RXKLXAVMRFLLRVRVWQYRQLXRMHRAPRPTRPDKARXLGYRAKQXXXXXXXXXXXXXX 320
           R K   VMRFL RVR W+YRQ   + R  RPTRPDKAR LGY+AKQ              
Sbjct: 12  RKKQSDVMRFLQRVRCWEYRQQPSIVRLVRPTRPDKARRLGYKAKQGFVVYRVRVRRGGR 71

Query: 321 XXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYW 467
                    YGKP + GV QLK  R+ +S+AEE            +SYW
Sbjct: 72  KRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVVNSYW 120



 Score = 33.1 bits (72), Expect = 0.26
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = +2

Query: 506 ILVDPSHKAIRRDPXIXW 559
           ILVDP+H A+R DP I W
Sbjct: 133 ILVDPAHNAVRNDPRINW 150


>At4g16720.1 68417.m02526 60S ribosomal protein L15 (RPL15A)
          Length = 204

 Score = 86.6 bits (205), Expect = 2e-17
 Identities = 47/109 (43%), Positives = 55/109 (50%)
 Frame = +3

Query: 141 RXKLXAVMRFLLRVRVWQYRQLXRMHRAPRPTRPDKARXLGYRAKQXXXXXXXXXXXXXX 320
           R K   VMRFL RVR W+YRQ   + R  RPTRPDKAR LGY+AKQ              
Sbjct: 12  RKKQSDVMRFLQRVRCWEYRQQPSIVRLVRPTRPDKARRLGYKAKQGFVVYRVRVRRGGR 71

Query: 321 XXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYW 467
                    YGKP + GV QLK  R+ +S+AEE            +SYW
Sbjct: 72  KRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVVNSYW 120



 Score = 33.1 bits (72), Expect = 0.26
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = +2

Query: 506 ILVDPSHKAIRRDPXIXW 559
           ILVDP+H A+R DP I W
Sbjct: 133 ILVDPAHNAVRNDPRINW 150


>At5g54770.1 68418.m06822 thiazole biosynthetic enzyme, chloroplast
           (ARA6) (THI1) (THI4) identical to SP|Q38814 Thiazole
           biosynthetic enzyme, chloroplast precursor (ARA6)
           {Arabidopsis thaliana}
          Length = 349

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = -2

Query: 404 LKVARGLQLVDTMALGLAISGTLSNWTLAATTSHTDS 294
           +K+   +   D +  G  + G ++NW L A   HT S
Sbjct: 179 VKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQS 215


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,629,371
Number of Sequences: 28952
Number of extensions: 208910
Number of successful extensions: 463
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 460
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2129873112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)