Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_E02
         (904 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20441| Best HMM Match : DUF1394 (HMM E-Value=0)                     52   6e-07
SB_33576| Best HMM Match : Pentaxin (HMM E-Value=1.3e-06)              31   1.7  
SB_24750| Best HMM Match : Rad10 (HMM E-Value=5.1)                     31   1.7  
SB_48329| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_27157| Best HMM Match : CLPTM1 (HMM E-Value=0)                      30   2.9  
SB_4930| Best HMM Match : ANF_receptor (HMM E-Value=0)                 29   6.8  
SB_36160| Best HMM Match : TFIIF_alpha (HMM E-Value=0)                 28   9.0  
SB_46060| Best HMM Match : Astacin (HMM E-Value=1.8e-17)               28   9.0  

>SB_20441| Best HMM Match : DUF1394 (HMM E-Value=0)
          Length = 522

 Score = 52.0 bits (119), Expect = 6e-07
 Identities = 27/72 (37%), Positives = 39/72 (54%)
 Frame = +1

Query: 232 PXLTEPPYYLKSPGLTGDAKLVEXGGPPYLVPQVKRDKIYDLAKLLEHLNRDPAFLAGAG 411
           P L E    L   G  G  ++V+ GGP YL+P  + +KIYD+  +    +    ++ GAG
Sbjct: 283 PPLDELAKGLILLGFGGKPRIVDVGGPAYLLPLPQLNKIYDMNDVAAKADLPGGYVIGAG 342

Query: 412 AGPWPYLGVNCE 447
           AG    +GVNCE
Sbjct: 343 AGSHTSVGVNCE 354



 Score = 37.1 bits (82), Expect = 0.019
 Identities = 16/38 (42%), Positives = 23/38 (60%)
 Frame = +3

Query: 633 KVVAKNRTGXSXFITXIRETLKTXYGDXVVGLGXAFVL 746
           KV A  RTG   F+T +R  L + YG+  VG+G  F++
Sbjct: 386 KVEASKRTGDENFVTCMRLALGSYYGNRAVGIGGTFMI 423



 Score = 31.9 bits (69), Expect = 0.73
 Identities = 13/18 (72%), Positives = 16/18 (88%)
 Frame = +1

Query: 583 ALLGNYLLTEGKPGKVIK 636
           +LL N L+TEGKPGKV+K
Sbjct: 369 SLLANCLITEGKPGKVLK 386


>SB_33576| Best HMM Match : Pentaxin (HMM E-Value=1.3e-06)
          Length = 799

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 20/71 (28%), Positives = 26/71 (36%)
 Frame = +1

Query: 439 NCEGIVNLSVRNGTVDQGTRIVSVHPVGAPKGSSGYLQQQLPNDETRTALLGNYLLTEGK 618
           N  G + L   N     GT  +  H V  P G+    Q  +PN         N     G+
Sbjct: 463 NPSGTITLHQHNVPNPSGTITLHQHSVPNPSGTINLDQHNVPNPSGTITSAFNVPNPSGE 522

Query: 619 PGKVIKWSRRT 651
             +V KW  RT
Sbjct: 523 ECRVTKWRPRT 533


>SB_24750| Best HMM Match : Rad10 (HMM E-Value=5.1)
          Length = 576

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
 Frame = +1

Query: 481 VDQGTRIVSVHPVGAPKGSSGYLQQQLPN----DETRTALLGNYLLTEGK 618
           ++  TR  +V PVG   G  G L  ++ N     E  T ++GN LL EG+
Sbjct: 515 IELKTRTGTVRPVGMRAGVEGALHIRMANIGHHSEMNTDMIGNVLLKEGQ 564


>SB_48329| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 324

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -2

Query: 579 PGLVVGQLLLEVAAAALGRSYWVHRHYSGTLVNSTVADT 463
           P + V  L LEV A  + + Y+   HYSGTL   +++ T
Sbjct: 227 PEIPVSDLRLEVQARLVCQVYFAAEHYSGTLETLSLSTT 265


>SB_27157| Best HMM Match : CLPTM1 (HMM E-Value=0)
          Length = 1264

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
 Frame = +1

Query: 514  PVGAPKGSSGY-LQQQLPNDETRTALL----GNYLLTEGKPGKVIKWSRRTARASPXLSR 678
            P+GA  G + Y L+ + P  + ++A L     N    +  PGKV  W+  TA     L+ 
Sbjct: 867  PLGAAWGGAQYSLKAEEPKAQVQSARLRSGSSNQATAQSSPGKVYSWANPTATKPKVLTS 926

Query: 679  XSE 687
             S+
Sbjct: 927  ASK 929


>SB_4930| Best HMM Match : ANF_receptor (HMM E-Value=0)
          Length = 1127

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +1

Query: 319 LVPQVKRDKIYDLAKLLEHLNRDPAFLAGAGAGPW 423
           +VP VK++ +   A+++++LNR P F     A PW
Sbjct: 359 VVPHVKKEDLEYFAEVIDNLNRTPKF----RASPW 389


>SB_36160| Best HMM Match : TFIIF_alpha (HMM E-Value=0)
          Length = 603

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = -3

Query: 476 PLRTLRFTIPSQFTPRYGHGPAPAPARKAGSRFKCSSSLARSYILSRLTCGTK 318
           P   ++F  PS    +    P+P    +A  R  CS +LA+ Y + R   G+K
Sbjct: 19  PETFVKFRNPSPQAFQVSLRPSPILFFRAFFRITCSKNLAKKYSMMRFQSGSK 71


>SB_46060| Best HMM Match : Astacin (HMM E-Value=1.8e-17)
          Length = 339

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +1

Query: 475 GTVDQGTRIVSVHPVGAPKGSSGYLQQQLPNDETRTALLGNYLLTEG 615
           GT  QGT   S H     KGS  Y++   P  +   A++G Y   +G
Sbjct: 291 GTPSQGTGPSSGH---GGKGSYMYIEASSPRKQNDNAMMGGYFTFDG 334


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,416,464
Number of Sequences: 59808
Number of extensions: 465861
Number of successful extensions: 1182
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1018
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1181
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2597949818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)