Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_E02
         (904 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g52960.1 68416.m05838 peroxiredoxin type 2, putative similar ...    30   2.4  
At3g24220.1 68416.m03039 9-cis-epoxycarotenoid dioxygenase, puta...    30   2.4  
At2g23460.1 68415.m02801 extra-large guanine nucleotide binding ...    29   5.6  

>At3g52960.1 68416.m05838 peroxiredoxin type 2, putative similar to
           type 2 peroxiredoxin [Brassica rapa subsp. pekinensis]
           GI:4928472; contains Pfam profile: PF00578 AhpC/TSA
           (alkyl hydroperoxide reductase and thiol-specific
           antioxidant) family
          Length = 234

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 16/48 (33%), Positives = 20/48 (41%)
 Frame = -3

Query: 530 LGAPTGCTDTILVPWSTVPLRTLRFTIPSQFTPRYGHGPAPAPARKAG 387
           L   TG   T+ V   T   +T+ F +P  FTP       P    KAG
Sbjct: 87  LDPSTGDVKTVTVSSLTAGKKTILFAVPGAFTPTCSQKHVPGFVSKAG 134


>At3g24220.1 68416.m03039 9-cis-epoxycarotenoid dioxygenase,
           putative / neoxanthin cleavage enzyme, putative /
           carotenoid cleavage dioxygenase, putative similar to
           GB:CAB10168 from [Lycopersicon esculentum] (J. Exp. Bot.
           47, 2111-2112 (1997)); similar to 9-cis-epoxycarotenoid
           dioxygenase [Phaseolus vulgaris][GI:6715257]
          Length = 577

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +1

Query: 373 HLNRDPAFLAGAGAGPWPYLGVNCEGIVNLSVRNGTVDQ 489
           ++ R   F+  A A PWP     C GI  + ++NGTV +
Sbjct: 463 YVGRKSQFVYIAIADPWP----KCSGIAKVDIQNGTVSE 497


>At2g23460.1 68415.m02801 extra-large guanine nucleotide binding
           protein / G-protein (XLG) identical to extra-large
           G-protein (XLG) [Arabidopsis thaliana] GI:3201680
          Length = 888

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = +3

Query: 528 QGQQRLPPATAAQRRDQDCVARKLPADGRETRKGNKVVAKNRTG 659
           +G++R      A R  + CV   +PAD  + +  +K V     G
Sbjct: 537 EGRERFEEEALALRNTKQCVLENIPADEGDAKSNDKTVTMYSIG 580


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,926,799
Number of Sequences: 28952
Number of extensions: 315925
Number of successful extensions: 857
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2129873112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)