Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_E01
         (900 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8394| Best HMM Match : zf-C3HC4 (HMM E-Value=8.6e-08)               29   6.8  
SB_45893| Best HMM Match : Arc (HMM E-Value=3.3)                       28   8.9  
SB_25182| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  

>SB_8394| Best HMM Match : zf-C3HC4 (HMM E-Value=8.6e-08)
          Length = 1631

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 6/77 (7%)
 Frame = +1

Query: 415 TRLSLCTSATVSL*R*AMMFKGDDGRPAYGDGKDKTSPRVSWKLIALWE------NNKVY 576
           T L++C   ++SL       K ++ R  Y   K K     +WK  +LWE      N+K Y
Sbjct: 495 TGLAVCAEKSLSL-----RIKSENSREFYQSLKGKLQ---TWKCKSLWELLDNRANHKDY 546

Query: 577 FKILNTERNQYLVLGVG 627
            +    E  Q LV+G G
Sbjct: 547 DRGTTCEHLQVLVIGAG 563


>SB_45893| Best HMM Match : Arc (HMM E-Value=3.3)
          Length = 186

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +2

Query: 257 EEERSHHKCREQTDTKQQDELHGVRLSTLAPGXPRXIVRDC 379
           +EERS    R   D  ++  +H VRL +  PG     V DC
Sbjct: 115 DEERSQSSVRHGPDLTEELAVHAVRLGSRLPGRSSNAV-DC 154


>SB_25182| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 58

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 291 KLIRNNKMNCMEYAYQLWLQGLQGTS 368
           +L  NN+M    +A+  WL+G QG+S
Sbjct: 17  RLHNNNRMLICTFAHSTWLKGRQGSS 42


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,710,154
Number of Sequences: 59808
Number of extensions: 392476
Number of successful extensions: 992
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 992
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2586032617
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)