Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_D24
         (910 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF007192-1|AAC02270.1|  338|Homo sapiens intestinal mucin protein.     32   3.3  
AF043724-1|AAC39862.1|  359|Homo sapiens hepatitis A virus cellu...    31   4.4  
Z72496-1|CAA96577.1| 3570|Homo sapiens mucin MUC5B protein.            31   5.8  

>AF007192-1|AAC02270.1|  338|Homo sapiens intestinal mucin protein.
          Length = 338

 Score = 31.9 bits (69), Expect = 3.3
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = +3

Query: 135 WPTLKETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTVPKADLTSSLPLS 302
           WPT   T ++L T   +S  +P T       TN++    +  T+P   +T S P S
Sbjct: 179 WPTATNTLSSLTTNILSSTPVPSTERTTSHTTNINPVSTLVTTLP-TTITRSTPTS 233


>AF043724-1|AAC39862.1|  359|Homo sapiens hepatitis A virus cellular
           receptor 1 protein.
          Length = 359

 Score = 31.5 bits (68), Expect = 4.4
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = +3

Query: 153 TATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTVP---KADLTSSLP 296
           T    +TT RTS  +P TTT+  T    + ++  T TVP       T+S+P
Sbjct: 136 TTVPTVTTVRTSTTVPTTTTVPTTTVPTTMSIPTTTTVPTTMTVSTTTSVP 186



 Score = 31.1 bits (67), Expect = 5.8
 Identities = 19/58 (32%), Positives = 32/58 (55%)
 Frame = +3

Query: 141 TLKETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTVPKADLTSSLPLSLVLA 314
           T+  T T   TT  T++ +P TTT+  T T +STT  +  T      T+S+P++  ++
Sbjct: 149 TVPTTTTVPTTTVPTTMSIPTTTTVPTTMT-VSTTTSVP-TTTSIPTTTSVPVTTTVS 204


>Z72496-1|CAA96577.1| 3570|Homo sapiens mucin MUC5B protein.
          Length = 3570

 Score = 31.1 bits (67), Expect = 5.8
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = +3

Query: 132 LWPTLKETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTVPKADLT 284
           L  +L  T T+ L+T++     P+T T M   TN +T+   T   PK + T
Sbjct: 417 LTTSLAPTLTSELSTSQAETSTPRTETTMSPLTNTTTSQGTTRCQPKCEWT 467


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,735,969
Number of Sequences: 237096
Number of extensions: 2395986
Number of successful extensions: 11980
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11964
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11770329464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)