Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_D24
         (910 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039047-13|AAM15587.1|  402|Caenorhabditis elegans Coexpressed ...    36   0.040
Z75542-6|CAA99864.3|  552|Caenorhabditis elegans Hypothetical pr...    35   0.070
Z75538-3|CAA99842.3|  552|Caenorhabditis elegans Hypothetical pr...    35   0.070
Z81044-5|CAE17706.2|  460|Caenorhabditis elegans Hypothetical pr...    33   0.21 
U21319-7|AAL16307.1|  469|Caenorhabditis elegans Hypothetical pr...    31   0.86 
Z74473-5|CAI79195.1|  245|Caenorhabditis elegans Hypothetical pr...    31   1.5  
Z84574-6|CAE17784.1|  174|Caenorhabditis elegans Hypothetical pr...    30   2.6  
Z82264-7|CAB05164.3|  499|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z49207-3|CAA89071.1|  927|Caenorhabditis elegans Hypothetical pr...    29   4.6  
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr...    29   4.6  
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p...    29   4.6  
AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical ...    29   4.6  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    28   8.0  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    28   8.0  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    28   8.0  

>AF039047-13|AAM15587.1|  402|Caenorhabditis elegans Coexpressed
           with polycystins protein4 protein.
          Length = 402

 Score = 35.9 bits (79), Expect = 0.040
 Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
 Frame = +3

Query: 123 LCWLWPTLKETATNLLTTARTSLILPKTTT---LMETATNLSTTVHITWTVPKADLTSSL 293
           LC+LW  L  T T   TT  T+  +  TTT   +  T T    T   T TVP    T+++
Sbjct: 179 LCYLWVPLTTTTTTTTTTTTTTSPMNTTTTTVLINGTTTTTVPTNETTTTVPLNGTTTTV 238

Query: 294 P 296
           P
Sbjct: 239 P 239


>Z75542-6|CAA99864.3|  552|Caenorhabditis elegans Hypothetical
           protein F55D12.5 protein.
          Length = 552

 Score = 35.1 bits (77), Expect = 0.070
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = +3

Query: 135 WPTLKETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTVPKADLTSSL 293
           WP   ET     TT  T+  +P TTT+  T T  +T    T T   A  T+++
Sbjct: 298 WPLPAETVPAPKTTTTTTTTVPSTTTITTTTTQRTTPYTTTTTTTAAPTTTTM 350


>Z75538-3|CAA99842.3|  552|Caenorhabditis elegans Hypothetical
           protein F55D12.5 protein.
          Length = 552

 Score = 35.1 bits (77), Expect = 0.070
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = +3

Query: 135 WPTLKETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTVPKADLTSSL 293
           WP   ET     TT  T+  +P TTT+  T T  +T    T T   A  T+++
Sbjct: 298 WPLPAETVPAPKTTTTTTTTVPSTTTITTTTTQRTTPYTTTTTTTAAPTTTTM 350


>Z81044-5|CAE17706.2|  460|Caenorhabditis elegans Hypothetical
           protein C30H6.11 protein.
          Length = 460

 Score = 33.5 bits (73), Expect = 0.21
 Identities = 20/50 (40%), Positives = 24/50 (48%)
 Frame = +3

Query: 138 PTLKETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTVPKADLTS 287
           PT + T T   TT  T+   P TTT  ET T  +TT   T T P    T+
Sbjct: 112 PTTETTTTPTTTTPTTTTTTPTTTTT-ETTTTPTTTTTETTTTPTTTTTT 160



 Score = 29.9 bits (64), Expect = 2.6
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = +3

Query: 141 TLKETATNLLTTARTSLILPKTTTLMETATNLS-TTVHITWTVPKADLTSS 290
           T   T T   TT  T+   P TTT   T T  + TT   T T P  + T++
Sbjct: 69  TTSTTTTTTPTTPTTTTTTPTTTTTTPTTTTTTPTTTTETTTTPTTETTTT 119



 Score = 29.9 bits (64), Expect = 2.6
 Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
 Frame = +3

Query: 141 TLKETATNLLTTARTSLILPKTTTLMETATNLSTTVHI-TWTVPKADLTSSLPLS 302
           T   T T   TT  T+  +P TTT   T T  +TT    T T P    T +   S
Sbjct: 198 TTTTTPTTTTTTPTTTTTVPTTTTTTPTTTTTTTTTPTTTTTTPTTTTTPATTTS 252



 Score = 29.5 bits (63), Expect = 3.5
 Identities = 20/52 (38%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
 Frame = +3

Query: 138 PTLKETA-TNLLTTARTSLILPKTTTLM-ETATNLSTTVHITWTVPKADLTS 287
           PT   TA T   TT  T+   P TTT +  T T   TT   T T P    T+
Sbjct: 189 PTTTTTAPTTTTTTPTTTTTTPTTTTTVPTTTTTTPTTTTTTTTTPTTTTTT 240



 Score = 29.1 bits (62), Expect = 4.6
 Identities = 17/49 (34%), Positives = 19/49 (38%)
 Frame = +3

Query: 141 TLKETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTVPKADLTS 287
           T   T T   TT  T+   P TTT   T     TT   T T P    T+
Sbjct: 83  TTTTTPTTTTTTPTTTTTTPTTTTETTTTPTTETTTTPTTTTPTTTTTT 131


>U21319-7|AAL16307.1|  469|Caenorhabditis elegans Hypothetical
           protein C30G12.1 protein.
          Length = 469

 Score = 31.5 bits (68), Expect = 0.86
 Identities = 19/55 (34%), Positives = 25/55 (45%)
 Frame = +3

Query: 138 PTLKETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTVPKADLTSSLPLS 302
           P  K+   N+ TT     I   TTT M T T  ST +  T T P+     ++P S
Sbjct: 275 PEKKKEVFNVFTTKTNPQI---TTTTMTTTTRTSTAIPTTTTTPRQISLQTIPFS 326


>Z74473-5|CAI79195.1|  245|Caenorhabditis elegans Hypothetical
           protein F56H9.6 protein.
          Length = 245

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 17/43 (39%), Positives = 19/43 (44%)
 Frame = +3

Query: 141 TLKETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTVP 269
           T   T T   TT+ T+   P TTT     T  STT   T T P
Sbjct: 60  TTTTTPTTTSTTSTTTTTTPTTTTTTTPTTTTSTTSTTTTTTP 102


>Z84574-6|CAE17784.1|  174|Caenorhabditis elegans Hypothetical
           protein F33E2.7 protein.
          Length = 174

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 22/57 (38%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = +3

Query: 141 TLKETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTVPKADLTS-SLPLSLV 308
           T   T T   TT  T+   P TTT   T T  +TT   T T P    T+ S PL+ V
Sbjct: 90  TTTTTPTTTTTTPTTTTTTPTTTTTTPTTT--TTTPTTTTTTPTTTTTTRSTPLTEV 144


>Z82264-7|CAB05164.3|  499|Caenorhabditis elegans Hypothetical
           protein C49C3.13 protein.
          Length = 499

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
 Frame = +3

Query: 153 TATNLLTTARTSLILPKTTTLMETATNLSTTVHIT--WTVPKADLTSSLP 296
           T T   TT  T+   P TTT   T T  +TT+  T   T P    T++ P
Sbjct: 304 TETTSTTTPTTTTTAPTTTTTASTTTFKTTTITTTTQTTTPTTTATTTKP 353



 Score = 28.3 bits (60), Expect = 8.0
 Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
 Frame = +3

Query: 153 TATNLLTTARTSLILPKTTTLMETATNL-STTVHITWTVPKADLTSS 290
           T T   TT  TS   P TTT   T T   STT   T T+     T++
Sbjct: 297 TTTESTTTETTSTTTPTTTTTAPTTTTTASTTTFKTTTITTTTQTTT 343


>Z49207-3|CAA89071.1|  927|Caenorhabditis elegans Hypothetical
           protein R07E3.6 protein.
          Length = 927

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 20/61 (32%), Positives = 32/61 (52%)
 Frame = +3

Query: 147 KETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTVPKADLTSSLPLSLVLAVGSK 326
           KET T+L T        PKTTT++ ++T  ST   +T    +A  T++ P + V    +K
Sbjct: 442 KETTTSLATEQ------PKTTTIVASSTETST---VTTDATEATTTTTAPTTTVATTTTK 492

Query: 327 E 329
           +
Sbjct: 493 K 493


>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical
           protein ZK945.9 protein.
          Length = 3178

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = +3

Query: 138 PTLKETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTVPKADLTS 287
           P+   T T + +T+ T      TTTL  +  + STT   T TV  +  TS
Sbjct: 407 PSTSTTTTEVTSTSSTVTTTEPTTTLTTSTASTSTTEPSTSTVTTSPSTS 456


>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
           protein ZK945.9 protein.
          Length = 3178

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = +3

Query: 138 PTLKETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTVPKADLTS 287
           P+   T T + +T+ T      TTTL  +  + STT   T TV  +  TS
Sbjct: 407 PSTSTTTTEVTSTSSTVTTTEPTTTLTTSTASTSTTEPSTSTVTTSPSTS 456


>AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical
           protein H02F09.3 protein.
          Length = 1275

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
 Frame = +3

Query: 138 PTLKETATNLLTTARTSLILPKTTTLMET--ATNLSTTVHITWTVPKADLTSSLPLSLVL 311
           PT+  T T ++TT  T + +P T   + T   TN ST V    TV     T     S V+
Sbjct: 361 PTVATTPTTVVTTPSTVVTVPSTVVTVPTTVVTNPSTVVTAPSTVVTVPTTVMTSRSTVI 420


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 18/61 (29%), Positives = 19/61 (31%)
 Frame = +3

Query: 711 PGGGGXXFXXXKKXPPPXGXXXVLXFXXPXPXPPPXNXXXPXXRXXXXVXPXPXGGXXXX 890
           P GG          PPP G    +    P P PPP     P         P P GG    
Sbjct: 731 PPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPP-------PPPPPGGFKGG 783

Query: 891 P 893
           P
Sbjct: 784 P 784


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 18/61 (29%), Positives = 19/61 (31%)
 Frame = +3

Query: 711 PGGGGXXFXXXKKXPPPXGXXXVLXFXXPXPXPPPXNXXXPXXRXXXXVXPXPXGGXXXX 890
           P GG          PPP G    +    P P PPP     P         P P GG    
Sbjct: 731 PPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPP-------PPPPPGGFKGG 783

Query: 891 P 893
           P
Sbjct: 784 P 784


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 18/61 (29%), Positives = 19/61 (31%)
 Frame = +3

Query: 711 PGGGGXXFXXXKKXPPPXGXXXVLXFXXPXPXPPPXNXXXPXXRXXXXVXPXPXGGXXXX 890
           P GG          PPP G    +    P P PPP     P         P P GG    
Sbjct: 314 PPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPP-------PPPPPGGFKGG 366

Query: 891 P 893
           P
Sbjct: 367 P 367


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,751,984
Number of Sequences: 27780
Number of extensions: 319333
Number of successful extensions: 914
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 885
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2318293978
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)