Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_D24
(910 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g26000.2 68418.m03094 glycosyl hydrolase family 1 protein con... 31 0.80
At5g26000.1 68418.m03093 glycosyl hydrolase family 1 protein con... 31 0.80
At3g63460.2 68416.m07146 WD-40 repeat family protein hypothetica... 29 3.2
At3g63460.1 68416.m07145 WD-40 repeat family protein hypothetica... 29 3.2
At1g72110.1 68414.m08335 expressed protein 28 7.4
At5g13960.1 68418.m01632 SET domain-containing protein (SUVH4) i... 28 9.8
At1g07310.1 68414.m00778 C2 domain-containing protein contains s... 28 9.8
>At5g26000.2 68418.m03094 glycosyl hydrolase family 1 protein
contains Pfam PF00232 : Glycosyl hydrolase family 1
domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
identical to Myrosinase precursor (Sinigrinase)
(SP:P37702) [Arabidopsis thaliana]
Length = 456
Score = 31.5 bits (68), Expect = 0.80
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Frame = +2
Query: 95 MKFFMIFVLALLAMANAQGNGYEPIDNRPYIVNPPKDYNPNGN---GY-EPIDNGAYYVD 262
MK M+ + LLA+A +G+ + +N P+ N K +N +GN G+ + + AY V+
Sbjct: 1 MKLLMLAFVFLLALATCKGDEFVCEENEPFTCNQTKLFN-SGNFEKGFIFGVASSAYQVE 59
Query: 263 RPQGR 277
+GR
Sbjct: 60 GGRGR 64
>At5g26000.1 68418.m03093 glycosyl hydrolase family 1 protein
contains Pfam PF00232 : Glycosyl hydrolase family 1
domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
identical to Myrosinase precursor (Sinigrinase)
(SP:P37702) [Arabidopsis thaliana]
Length = 541
Score = 31.5 bits (68), Expect = 0.80
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Frame = +2
Query: 95 MKFFMIFVLALLAMANAQGNGYEPIDNRPYIVNPPKDYNPNGN---GY-EPIDNGAYYVD 262
MK M+ + LLA+A +G+ + +N P+ N K +N +GN G+ + + AY V+
Sbjct: 1 MKLLMLAFVFLLALATCKGDEFVCEENEPFTCNQTKLFN-SGNFEKGFIFGVASSAYQVE 59
Query: 263 RPQGR 277
+GR
Sbjct: 60 GGRGR 64
>At3g63460.2 68416.m07146 WD-40 repeat family protein hypothetical
protein contains similarity to ec31p [Oryza sativa]
gi|13928450|dbj|BAB47154; contains Pfam profile PF00400:
WD domain, G-beta repeat
Length = 1102
Score = 29.5 bits (63), Expect = 3.2
Identities = 25/92 (27%), Positives = 37/92 (40%), Gaps = 2/92 (2%)
Frame = +2
Query: 32 EFLKILTTLIFSPVIT--RDHIKMKFFMIFVLALLAMANAQGNGYEPIDNRPYIVNPPKD 205
++LK+L + SP ++ RD I + A N Q P + P P
Sbjct: 757 KYLKVLDSGGLSPELSILRDRISLSAEP--ETNTTASGNTQPQSTMPYNQEPTQAQPNVL 814
Query: 206 YNPNGNGYEPIDNGAYYVDRPQGRPYFKPTPF 301
NP N Y+ +YYV + P +PT F
Sbjct: 815 ANPYDNQYQQPYTDSYYVPQVSHPPMQQPTMF 846
>At3g63460.1 68416.m07145 WD-40 repeat family protein hypothetical
protein contains similarity to ec31p [Oryza sativa]
gi|13928450|dbj|BAB47154; contains Pfam profile PF00400:
WD domain, G-beta repeat
Length = 1104
Score = 29.5 bits (63), Expect = 3.2
Identities = 25/92 (27%), Positives = 37/92 (40%), Gaps = 2/92 (2%)
Frame = +2
Query: 32 EFLKILTTLIFSPVIT--RDHIKMKFFMIFVLALLAMANAQGNGYEPIDNRPYIVNPPKD 205
++LK+L + SP ++ RD I + A N Q P + P P
Sbjct: 759 KYLKVLDSGGLSPELSILRDRISLSAEP--ETNTTASGNTQPQSTMPYNQEPTQAQPNVL 816
Query: 206 YNPNGNGYEPIDNGAYYVDRPQGRPYFKPTPF 301
NP N Y+ +YYV + P +PT F
Sbjct: 817 ANPYDNQYQQPYTDSYYVPQVSHPPMQQPTMF 848
>At1g72110.1 68414.m08335 expressed protein
Length = 479
Score = 28.3 bits (60), Expect = 7.4
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -3
Query: 392 NSYEILKYIVNTLFRY*-FSKIFFTSHREHQGK 297
N+ I++ I NTL + FS I T H EH+GK
Sbjct: 41 NASTIVEGIKNTLINHPRFSSILVTGHGEHKGK 73
>At5g13960.1 68418.m01632 SET domain-containing protein (SUVH4)
identical to SUVH4 [Arabidopsis thaliana] GI:13517749;
contains Pfam profiles PF00856: SET domain, PF05033:
Pre-SET motif, PF02182: YDG/SRA domain; identical to
cDNA SUVH4 (SUVH4) GI:13517748
Length = 624
Score = 27.9 bits (59), Expect = 9.8
Identities = 14/23 (60%), Positives = 16/23 (69%)
Frame = -1
Query: 166 RFVAVSLSVGHSQQSEDENHEEF 98
R VAV ++ G SQ SEDEN EF
Sbjct: 514 RDVAVPMNNGVSQSSEDENAPEF 536
>At1g07310.1 68414.m00778 C2 domain-containing protein contains
similarity to shock protein SRC2 [Glycine max]
gi|2055230|dbj|BAA19769 ; contains Pfam profile
PF00168:C2 domain
Length = 352
Score = 27.9 bits (59), Expect = 9.8
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +2
Query: 194 PPKDYNPNGNGYEPIDNGAYYVDRPQGRPYFKPTPFP 304
PP + P +P+D Y PQG Y+ P+P P
Sbjct: 141 PPPQHPPPRPQSQPLD----YYSAPQGNHYYSPSPPP 173
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,832,022
Number of Sequences: 28952
Number of extensions: 289975
Number of successful extensions: 652
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2149324008
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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