Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_D23
         (870 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44684| Best HMM Match : Synaphin (HMM E-Value=7.5)                  28   8.6  
SB_8467| Best HMM Match : rve (HMM E-Value=2.4e-13)                    28   8.6  

>SB_44684| Best HMM Match : Synaphin (HMM E-Value=7.5)
          Length = 141

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 509 DKNTHFSAGGMVSKEFGHKRPDVGLQAEIRHD 604
           + +  F  G ++ +EFGHKRP    +A    D
Sbjct: 64  EMDEEFGIGELIHEEFGHKRPSSSRKAYTSRD 95


>SB_8467| Best HMM Match : rve (HMM E-Value=2.4e-13)
          Length = 347

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -1

Query: 510 SRSHTPEPDAVIPDLPPICLFRSIVAXAFXF 418
           +R H PEP   +P  PP   F ++ A  F +
Sbjct: 10  TRRHRPEPPPPLPTAPPSTPFEAVFADFFDY 40


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,949,860
Number of Sequences: 59808
Number of extensions: 345076
Number of successful extensions: 1006
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1006
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2491217872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)