Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_D22
         (952 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    27   0.21 
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    26   0.49 
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    25   0.65 
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   6.1  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   6.1  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           22   8.0  

>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 27.1 bits (57), Expect = 0.21
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -1

Query: 355 PASRPGSCAHPTSARTPSHCRAPQTRKQKRD 263
           PA+ P S A PT   TPS   +P T   K++
Sbjct: 211 PAAAPRSVATPTGIPTPSTSASPPTVNIKKE 241


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 25.8 bits (54), Expect = 0.49
 Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 4/39 (10%)
 Frame = +2

Query: 842 PXXTPTPPXXXPXXX-PPSRF---NHLPXXHLPPXXXPP 946
           P   P P    P    PP+ F   N+LP   +PP   PP
Sbjct: 149 PKYEPNPSIIDPGPALPPAGFLCNNYLPLPQVPPLPLPP 187


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
            protein.
          Length = 947

 Score = 25.4 bits (53), Expect = 0.65
 Identities = 14/31 (45%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
 Frame = -2

Query: 153  PHPAGQTARRI-FVCGGHVERARACRCGRSE 64
            P   G TAR +  VC G     RA  CGR E
Sbjct: 908  PASGGTTARVVRCVCAGSTGTRRATGCGRVE 938


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 13/43 (30%), Positives = 15/43 (34%), Gaps = 2/43 (4%)
 Frame = +2

Query: 809 RXXPXPSFPPXPXXTPTPP--XXXPXXXPPSRFNHLPXXHLPP 931
           R  P    PP P  +P PP     P    P     LP  +  P
Sbjct: 223 RFSPTGLIPPHPGLSPHPPHLSSHPAIVTPGPKQELPDLNHKP 265


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 13/43 (30%), Positives = 15/43 (34%), Gaps = 2/43 (4%)
 Frame = +2

Query: 809 RXXPXPSFPPXPXXTPTPP--XXXPXXXPPSRFNHLPXXHLPP 931
           R  P    PP P  +P PP     P    P     LP  +  P
Sbjct: 115 RFSPTGLIPPHPGLSPHPPHLSSHPAIVTPGPKQELPDLNHKP 157


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 8/28 (28%), Positives = 11/28 (39%)
 Frame = -3

Query: 212 PSHTRNAVASSSETSARHHRRTQPDKPR 129
           P    N        +  H RR +P +PR
Sbjct: 306 PGEKTNIAPRERPRATDHQRRNEPKRPR 333


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,702
Number of Sequences: 336
Number of extensions: 2564
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 26789147
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)