Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_D22
(952 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr 1|... 38 0.003
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 33 0.078
SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 29 0.96
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|... 28 1.7
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 28 1.7
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 28 2.2
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 28 2.2
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 28 2.2
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 2.9
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 27 5.1
SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy... 27 5.1
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos... 26 6.8
>SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 37.5 bits (83), Expect = 0.003
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Frame = +1
Query: 148 VRRWWRALVSELLATAFLVWLGVSSVVPYKGKEAVVLSHPA--FAFGFVVLGNAMAFGPT 321
+R ++R +E L T LV GV S + S + FA+GF + G
Sbjct: 306 IRHFFREGFAEFLGTLVLVVFGVGSNLQATVTNGAGGSFESLSFAWGFGCMLGVYIAGGI 365
Query: 322 SGAHMNPAVTLAAAL 366
SG H+NPAVT++ A+
Sbjct: 366 SGGHVNPAVTISLAI 380
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 32.7 bits (71), Expect = 0.078
Identities = 20/67 (29%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Frame = -3
Query: 362 AAASVTAGFMCAPDVGPNAIALPSTTNPK-AKAGCDSTTASFPLYGTTELTPSHTRNAVA 186
A++S+T+ + + + +++A STT+ A + +STT++ P T+ T S + A
Sbjct: 130 ASSSITSSSLASSSITSSSLASSSTTSSSLASSSTNSTTSATP---TSSATSSSLSSTAA 186
Query: 185 SSSETSA 165
S+S TS+
Sbjct: 187 SNSATSS 193
>SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 529
Score = 29.1 bits (62), Expect = 0.96
Identities = 19/65 (29%), Positives = 30/65 (46%)
Frame = -3
Query: 308 AIALPSTTNPKAKAGCDSTTASFPLYGTTELTPSHTRNAVASSSETSARHHRRTQPDKPR 129
+++ S P+ A D+T++S P TTE S T + SS + SA T P
Sbjct: 413 SLSKESPVEPEKPALPDATSSSTP---TTENKESWTNQGIKSSQQRSANASPATSPSNQA 469
Query: 128 GVSSS 114
+ +S
Sbjct: 470 SIHAS 474
>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 843
Score = 28.3 bits (60), Expect = 1.7
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = -3
Query: 311 NAIALPSTTNPKAKAGCDSTTASFPLYGTTELTPSHTRNAVASSSETSAR 162
N + +T A G T+S YG+T + H RN++A S+ +
Sbjct: 513 NVVTTQTTHEEDALIGSSINTSSHQHYGSTLNSTPHRRNSIALSNRAHVK 562
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 28.3 bits (60), Expect = 1.7
Identities = 15/51 (29%), Positives = 17/51 (33%)
Frame = +2
Query: 800 APXRXXPXPSFPPXPXXTPTPPXXXPXXXPPSRFNHLPXXHLPPXXXPPHS 952
AP P PP P + PP P PP + PP P S
Sbjct: 1021 APPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSS 1071
Score = 25.8 bits (54), Expect = 9.0
Identities = 12/35 (34%), Positives = 14/35 (40%)
Frame = +2
Query: 788 APXWAPXRXXPXPSFPPXPXXTPTPPXXXPXXXPP 892
AP AP P + PP P + PP P P
Sbjct: 1116 APSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAP 1150
Score = 25.8 bits (54), Expect = 9.0
Identities = 18/61 (29%), Positives = 22/61 (36%), Gaps = 6/61 (9%)
Frame = +2
Query: 788 APXWAPXRXXPXPSFPPXPXXT------PTPPXXXPXXXPPSRFNHLPXXHLPPXXXPPH 949
AP AP P + PP P + P P P PPS +P + PP
Sbjct: 1154 APSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPP 1213
Query: 950 S 952
S
Sbjct: 1214 S 1214
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.9 bits (59), Expect = 2.2
Identities = 15/44 (34%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Frame = +2
Query: 767 PXXXRXXAPXWAPXRXXPXPSFPPXPXXTPT-PPXXXPXXXPPS 895
P P P P PS PP P P+ PP P PS
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPS 1742
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 27.9 bits (59), Expect = 2.2
Identities = 19/53 (35%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Frame = -2
Query: 942 GXXXGGRWXXGRWLXREGGXXXGXXXGGVGVXXGX-GGKEGXGXXRXGAQXGA 787
G GGR G G G GG G G GG+ G R GA+ GA
Sbjct: 19 GGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGGAKGGA 71
Score = 26.2 bits (55), Expect = 6.8
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = -3
Query: 938 GXRGXGGXXGGG*XGRGGXXXGXG 867
G RG G GG GRGG G G
Sbjct: 42 GARGGRGGRGGARGGRGGSSGGRG 65
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 27.9 bits (59), Expect = 2.2
Identities = 14/73 (19%), Positives = 41/73 (56%)
Frame = -3
Query: 383 GDMRPCSAAASVTAGFMCAPDVGPNAIALPSTTNPKAKAGCDSTTASFPLYGTTELTPSH 204
G ++ +++SV++ + P++ + +TT+P + + S+++S ++ + S
Sbjct: 121 GVLQTTVSSSSVSSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSS 180
Query: 203 TRNAVASSSETSA 165
+ ++ +SSS +S+
Sbjct: 181 SSSSSSSSSSSSS 193
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 27.5 bits (58), Expect = 2.9
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Frame = +2
Query: 791 PXWAPXRXXPXPSFPPXPXXTPTPPXXXPXXXP-PSR-FNHL-PXXHLPPXXXPP 946
P + P + P P+ PP P T P P PSR N+L ++PP P
Sbjct: 225 PTYTPKQADPLPAPPPPPPPTLPPQSTNTSQLPMPSRNVNNLGSQVNIPPPPATP 279
>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 26.6 bits (56), Expect = 5.1
Identities = 23/89 (25%), Positives = 32/89 (35%), Gaps = 1/89 (1%)
Frame = -3
Query: 371 PCSAAASVTAGFMCAPDVGPNAIALPSTTNPKAKAGCDS-TTASFPLYGTTELTPSHTRN 195
P + +A+V G A + T K AG S TT P TT+ TP
Sbjct: 524 PGTTSAAVPGGKKSAIEAAAPIPTSADTVESKHAAGSGSATTIPSPGSATTKPTPGSATT 583
Query: 194 AVASSSETSARHHRRTQPDKPRGVSSSVE 108
S T T+P G +++ E
Sbjct: 584 KPTPVSATEEHAAGTTKPAPAAGATATAE 612
>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 794
Score = 26.6 bits (56), Expect = 5.1
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +1
Query: 100 HMPSTDEDTPRGLSGWV 150
+ P +DTP+GLS W+
Sbjct: 565 YAPQASDDTPKGLSKWI 581
>SPAC2E1P3.05c |||fungal cellulose binding domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 197
Score = 26.2 bits (55), Expect = 6.8
Identities = 15/40 (37%), Positives = 26/40 (65%)
Frame = -3
Query: 296 PSTTNPKAKAGCDSTTASFPLYGTTELTPSHTRNAVASSS 177
PS+++ A + STT+S L +T LT S + +AV+S++
Sbjct: 110 PSSSSSSAASSTTSTTSSSSLVSSTTLT-SSSPSAVSSTT 148
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,386,128
Number of Sequences: 5004
Number of extensions: 36302
Number of successful extensions: 192
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 485316198
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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