Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_D22
(952 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_22077| Best HMM Match : MIP (HMM E-Value=0) 50 3e-06
SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.007
SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33) 36 0.048
SB_22076| Best HMM Match : MIP (HMM E-Value=3.89981e-42) 34 0.15
SB_20869| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.34
SB_46036| Best HMM Match : PSRT (HMM E-Value=1) 32 0.78
SB_5388| Best HMM Match : PH (HMM E-Value=2.5e-08) 32 0.78
SB_33719| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4
SB_48634| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.8
SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42) 31 1.8
SB_53865| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4
SB_55889| Best HMM Match : REJ (HMM E-Value=5.4e-07) 30 2.4
SB_51825| Best HMM Match : 7tm_1 (HMM E-Value=3.8e-08) 30 2.4
SB_32451| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4
SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033) 30 2.4
SB_48525| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0) 30 3.2
SB_2559| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 3.2
SB_47784| Best HMM Match : Ank (HMM E-Value=1.4e-08) 29 4.2
SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_41742| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_35885| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_24403| Best HMM Match : BRF1 (HMM E-Value=1.2) 29 5.5
SB_23053| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_11627| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=2.6) 29 5.5
SB_42616| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.3
SB_17543| Best HMM Match : Keratin_B2 (HMM E-Value=1.9) 29 7.3
SB_15263| Best HMM Match : Jun (HMM E-Value=1.8) 29 7.3
SB_3531| Best HMM Match : Cytomega_US3 (HMM E-Value=6.7) 29 7.3
SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07) 29 7.3
SB_49641| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.3
SB_12127| Best HMM Match : Endonuclease_NS (HMM E-Value=2.9e-35) 29 7.3
SB_6245| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.3
SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.6
SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.6
SB_3524| Best HMM Match : ETS_PEA3_N (HMM E-Value=5.8) 28 9.6
SB_49341| Best HMM Match : Rad21_Rec8_N (HMM E-Value=2.3) 28 9.6
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.6
SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10) 28 9.6
SB_30592| Best HMM Match : MAM (HMM E-Value=2.66247e-44) 28 9.6
SB_28143| Best HMM Match : Neur_chan_memb (HMM E-Value=2.2) 28 9.6
>SB_22077| Best HMM Match : MIP (HMM E-Value=0)
Length = 374
Score = 50.0 bits (114), Expect = 3e-06
Identities = 27/86 (31%), Positives = 43/86 (50%)
Frame = +1
Query: 157 WWRALVSELLATAFLVWLGVSSVVPYKGKEAVVLSHPAFAFGFVVLGNAMAFGPTSGAHM 336
+W ++ +E LAT F V++ S + + + + H A G + AMA G SG H+
Sbjct: 46 FWVSVFAEFLATFFFVFMVCGSCLLWDKNDPPAVQHIALCAGLGIATWAMAVGHWSGGHI 105
Query: 337 NPAVTLAAALQGRMSPALAAAYTVAQ 414
NPAVT+ +++ Y VAQ
Sbjct: 106 NPAVTVGFLSSNKIAILQGVCYIVAQ 131
Score = 33.9 bits (74), Expect = 0.19
Identities = 21/65 (32%), Positives = 30/65 (46%)
Frame = +1
Query: 322 SGAHMNPAVTLAAALQGRMSPALAAAYTVAQVXXXXXXXXXXXXVTPASALGTDEGCTLX 501
SG H+NPAVT++ + ++S A Y + QV +TP GT G T+
Sbjct: 194 SGGHINPAVTISFMIVRKVSFLRGAFYVIGQVGGGIAGSAMLYGLTPVDKRGT-LGATVP 252
Query: 502 ARDVS 516
VS
Sbjct: 253 NAGVS 257
>SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 290
Score = 38.7 bits (86), Expect = 0.007
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = +2
Query: 797 WAPXRXXPXPSFPPXPXXTPTPPXXXPXXXPPSRFNHLPXXHLPPXXXPPHS 952
++P P P +PP P P PP P PP + P + PP PP++
Sbjct: 88 FSPNPPYPPPPYPPYPPPPPYPPPPNPPYPPPPNAPYPPPPN-PPYPPPPNA 138
Score = 35.5 bits (78), Expect = 0.064
Identities = 18/52 (34%), Positives = 21/52 (40%)
Frame = +2
Query: 791 PXWAPXRXXPXPSFPPXPXXTPTPPXXXPXXXPPSRFNHLPXXHLPPXXXPP 946
P AP P P +PP P P PP PP + P + PP PP
Sbjct: 119 PPNAPYPPPPNPPYPP-PPNAPYPPSPNAPYPPPPNPPYPPPLYPPPPNPPP 169
Score = 34.7 bits (76), Expect = 0.11
Identities = 17/50 (34%), Positives = 21/50 (42%)
Frame = +2
Query: 803 PXRXXPXPSFPPXPXXTPTPPXXXPXXXPPSRFNHLPXXHLPPXXXPPHS 952
P P P +PP P PP P PP+ N P PP PP++
Sbjct: 170 PNAPYPPPPYPPPPNPPYPPPPNPPYPPPPNAPNPPPPN--PPYPPPPNA 217
Score = 34.3 bits (75), Expect = 0.15
Identities = 17/54 (31%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Frame = +2
Query: 791 PXWAPXRXXPXPSFPPXPXXTPTPPXXXPXXXPPSR-FNHLPXXHLPPXXXPPH 949
P P P P +PP P PP P PP+ + P PP PP+
Sbjct: 103 PPPPPYPPPPNPPYPPPPNAPYPPPPNPPYPPPPNAPYPPSPNAPYPPPPNPPY 156
Score = 34.3 bits (75), Expect = 0.15
Identities = 17/53 (32%), Positives = 19/53 (35%)
Frame = +2
Query: 791 PXWAPXRXXPXPSFPPXPXXTPTPPXXXPXXXPPSRFNHLPXXHLPPXXXPPH 949
P AP P +PP P PP P PP P PP PP+
Sbjct: 135 PPNAPYPPSPNAPYPPPPNPPYPPPLYPPPPNPPPPNAPYPPPPYPPPPNPPY 187
Score = 33.5 bits (73), Expect = 0.26
Identities = 17/53 (32%), Positives = 20/53 (37%)
Frame = +2
Query: 791 PXWAPXRXXPXPSFPPXPXXTPTPPXXXPXXXPPSRFNHLPXXHLPPXXXPPH 949
P P P P +PP P P PP P PP + P P PP+
Sbjct: 182 PPNPPYPPPPNPPYPP-PPNAPNPPPPNPPYPPPPNAPNPPYPPPPNAPNPPY 233
Score = 33.1 bits (72), Expect = 0.34
Identities = 17/50 (34%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Frame = +2
Query: 803 PXRXXPXPSFPPXPXXT-PTPPXXXPXXXPPSRFNHLPXXHLPPXXXPPH 949
P P P +PP P P PP P PP + P PP PP+
Sbjct: 85 PTNFSPNPPYPPPPYPPYPPPPPYPPPPNPP--YPPPPNAPYPPPPNPPY 132
Score = 32.3 bits (70), Expect = 0.59
Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Frame = +2
Query: 803 PXRXXPXPSFPPXPXXTPTPPXXXPXXXPPS-RFNHLPXXHLPPXXXPPHS 952
P P P +PP P PP P PP+ + P PP PP++
Sbjct: 178 PYPPPPNPPYPPPPNPPYPPPPNAPNPPPPNPPYPPPPNAPNPPYPPPPNA 228
Score = 31.1 bits (67), Expect = 1.4
Identities = 16/52 (30%), Positives = 17/52 (32%)
Frame = +2
Query: 791 PXWAPXRXXPXPSFPPXPXXTPTPPXXXPXXXPPSRFNHLPXXHLPPXXXPP 946
P + P P P P P P P P PP P PP PP
Sbjct: 130 PPYPPPPNAPYPPSPNAPYPPPPNPPYPPPLYPPPPNPPPPNAPYPPPPYPP 181
Score = 31.1 bits (67), Expect = 1.4
Identities = 15/50 (30%), Positives = 18/50 (36%)
Frame = +2
Query: 800 APXRXXPXPSFPPXPXXTPTPPXXXPXXXPPSRFNHLPXXHLPPXXXPPH 949
AP P P +PP P P PP + P PP PP+
Sbjct: 146 APYPPPPNPPYPPPLYPPPPNPPPPNAPYPPPPYPPPPNPPYPPPPNPPY 195
Score = 31.1 bits (67), Expect = 1.4
Identities = 15/50 (30%), Positives = 18/50 (36%)
Frame = +2
Query: 803 PXRXXPXPSFPPXPXXTPTPPXXXPXXXPPSRFNHLPXXHLPPXXXPPHS 952
P P P +PP P P P PP P PP PP++
Sbjct: 152 PNPPYPPPLYPPPPNPPPPNAPYPPPPYPPPPNPPYPPPPNPPYPPPPNA 201
Score = 29.5 bits (63), Expect = 4.2
Identities = 15/53 (28%), Positives = 19/53 (35%)
Frame = +2
Query: 791 PXWAPXRXXPXPSFPPXPXXTPTPPXXXPXXXPPSRFNHLPXXHLPPXXXPPH 949
P + P P P+ P P P PP P + P PP PP+
Sbjct: 159 PLYPPPPNPPPPNAPYPPPPYPPPPNPPYPPPPNPPYPPPPNAPNPPPPNPPY 211
>SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33)
Length = 457
Score = 35.9 bits (79), Expect = 0.048
Identities = 18/52 (34%), Positives = 18/52 (34%)
Frame = +2
Query: 791 PXWAPXRXXPXPSFPPXPXXTPTPPXXXPXXXPPSRFNHLPXXHLPPXXXPP 946
P P P P PP P P PP P PP P PP PP
Sbjct: 375 PPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPPPPP 426
Score = 35.9 bits (79), Expect = 0.048
Identities = 19/52 (36%), Positives = 19/52 (36%)
Frame = +2
Query: 791 PXWAPXRXXPXPSFPPXPXXTPTPPXXXPXXXPPSRFNHLPXXHLPPXXXPP 946
P P P PS PP P P PP P PP P PP PP
Sbjct: 376 PSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPPPPPP 427
Score = 34.3 bits (75), Expect = 0.15
Identities = 16/43 (37%), Positives = 17/43 (39%)
Frame = +2
Query: 818 PXPSFPPXPXXTPTPPXXXPXXXPPSRFNHLPXXHLPPXXXPP 946
P P PP P +P PP P PP P PP PP
Sbjct: 366 PPPPPPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPP 408
Score = 34.3 bits (75), Expect = 0.15
Identities = 18/53 (33%), Positives = 19/53 (35%)
Frame = +2
Query: 788 APXWAPXRXXPXPSFPPXPXXTPTPPXXXPXXXPPSRFNHLPXXHLPPXXXPP 946
+P P P P PP P P PP P PP P PP PP
Sbjct: 377 SPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPPPPPPPP 429
Score = 34.3 bits (75), Expect = 0.15
Identities = 18/52 (34%), Positives = 18/52 (34%)
Frame = +2
Query: 791 PXWAPXRXXPXPSFPPXPXXTPTPPXXXPXXXPPSRFNHLPXXHLPPXXXPP 946
P P P P PP P P PP P PP P PP PP
Sbjct: 381 PPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPPPPPPPPPPP 432
Score = 33.9 bits (74), Expect = 0.19
Identities = 16/43 (37%), Positives = 17/43 (39%)
Frame = +2
Query: 818 PXPSFPPXPXXTPTPPXXXPXXXPPSRFNHLPXXHLPPXXXPP 946
P P PP P P PP P PP + P PP PP
Sbjct: 368 PPPPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPP 410
Score = 33.9 bits (74), Expect = 0.19
Identities = 18/52 (34%), Positives = 18/52 (34%)
Frame = +2
Query: 791 PXWAPXRXXPXPSFPPXPXXTPTPPXXXPXXXPPSRFNHLPXXHLPPXXXPP 946
P P P P PP P P PP P PP P PP PP
Sbjct: 372 PPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPP 423
Score = 33.1 bits (72), Expect = 0.34
Identities = 18/53 (33%), Positives = 19/53 (35%)
Frame = +2
Query: 788 APXWAPXRXXPXPSFPPXPXXTPTPPXXXPXXXPPSRFNHLPXXHLPPXXXPP 946
+P P P PS PP P P P P PP P PP PP
Sbjct: 364 SPPPPPPPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPP 416
Score = 31.5 bits (68), Expect = 1.0
Identities = 17/52 (32%), Positives = 17/52 (32%)
Frame = +2
Query: 791 PXWAPXRXXPXPSFPPXPXXTPTPPXXXPXXXPPSRFNHLPXXHLPPXXXPP 946
P P P P P P P PP P PP P PP PP
Sbjct: 380 PPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPPPPPPPPPP 431
Score = 30.7 bits (66), Expect = 1.8
Identities = 17/52 (32%), Positives = 17/52 (32%)
Frame = +2
Query: 791 PXWAPXRXXPXPSFPPXPXXTPTPPXXXPXXXPPSRFNHLPXXHLPPXXXPP 946
P P P P PP P PP P PP P PP PP
Sbjct: 367 PPPPPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPP 418
Score = 30.7 bits (66), Expect = 1.8
Identities = 17/52 (32%), Positives = 17/52 (32%)
Frame = +2
Query: 791 PXWAPXRXXPXPSFPPXPXXTPTPPXXXPXXXPPSRFNHLPXXHLPPXXXPP 946
P P P P PP P P P P PP P PP PP
Sbjct: 370 PPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPP 421
Score = 30.3 bits (65), Expect = 2.4
Identities = 13/35 (37%), Positives = 14/35 (40%)
Frame = +2
Query: 791 PXWAPXRXXPXPSFPPXPXXTPTPPXXXPXXXPPS 895
P P P P PP P P PP P PP+
Sbjct: 399 PPPPPPPPPPPPPPPPPPPPAPPPPPPPPPPPPPA 433
>SB_22076| Best HMM Match : MIP (HMM E-Value=3.89981e-42)
Length = 365
Score = 34.3 bits (75), Expect = 0.15
Identities = 22/89 (24%), Positives = 37/89 (41%)
Frame = +1
Query: 151 RRWWRALVSELLATAFLVWLGVSSVVPYKGKEAVVLSHPAFAFGFVVLGNAMAFGPTSGA 330
RR+W +++E + T+ V + V L+H A G AM S
Sbjct: 14 RRFWTEILAEFIITSLFVSI-VCGTALQNWSTPPTLTHMALNSGLAAGTFAMCMWDVSSG 72
Query: 331 HMNPAVTLAAALQGRMSPALAAAYTVAQV 417
NPA+T+ + G+ + Y +AQ+
Sbjct: 73 LFNPALTIGFLITGKKTLLQTIFYIMAQL 101
>SB_20869| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1212
Score = 33.1 bits (72), Expect = 0.34
Identities = 16/52 (30%), Positives = 20/52 (38%)
Frame = +2
Query: 791 PXWAPXRXXPXPSFPPXPXXTPTPPXXXPXXXPPSRFNHLPXXHLPPXXXPP 946
P P + P PS P P P PP PP + + +P P PP
Sbjct: 1055 PIPPPRKPSPPPSEPAPPPRQPPPPSTSQPVPPPRQPDPIPTNPAHPTEPPP 1106
Score = 29.1 bits (62), Expect = 5.5
Identities = 16/49 (32%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Frame = +2
Query: 803 PXRXXPXPSFPPXPXX-TPTPPXXXPXXXPPSRFNHLPXXHLPPXXXPP 946
P R PS P P P+PP PP + + P PP PP
Sbjct: 1029 PKRKASPPSAQPLPPPRKPSPPPSAVPIPPPRKPSPPPSEPAPPPRQPP 1077
>SB_46036| Best HMM Match : PSRT (HMM E-Value=1)
Length = 878
Score = 31.9 bits (69), Expect = 0.78
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
Frame = -2
Query: 231 RHHGADAEPHEERRGQQLGDQRSPPSP---HPAGQTARRIFVCGGHVERARACRCGRSEC 61
RH E E G+ + ++RSP P P + ARR ERA + RSE
Sbjct: 129 RHSKKGKERKGELPGRSMEEERSPEPPAREEPRRENARRRKDSSSENERANKPKTRRSET 188
Query: 60 RRRTQNLKNSTS 25
R Q+ + S+S
Sbjct: 189 RSSRQSNQRSSS 200
>SB_5388| Best HMM Match : PH (HMM E-Value=2.5e-08)
Length = 293
Score = 31.9 bits (69), Expect = 0.78
Identities = 19/67 (28%), Positives = 23/67 (34%), Gaps = 1/67 (1%)
Frame = +2
Query: 749 HSGHXXPXXXRXXAPXWAPXRXXPXPSFPPXPXXT-PTPPXXXPXXXPPSRFNHLPXXHL 925
+ G P A + P P S+PP P P P P PP + P
Sbjct: 131 YPGAAGPPMPHPTASVYPPPGGYPPTSYPPQPYPAQPYPQQGYPPQPPPQAY---PQPGY 187
Query: 926 PPXXXPP 946
PP PP
Sbjct: 188 PPQGYPP 194
Score = 29.1 bits (62), Expect = 5.5
Identities = 13/43 (30%), Positives = 16/43 (37%)
Frame = +2
Query: 818 PXPSFPPXPXXTPTPPXXXPXXXPPSRFNHLPXXHLPPXXXPP 946
P P + P P P P P P+ + P PP PP
Sbjct: 118 PPPPYSPIPPQVPYPGAAGPPMPHPTASVYPPPGGYPPTSYPP 160
>SB_33719| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 217
Score = 31.1 bits (67), Expect = 1.4
Identities = 19/85 (22%), Positives = 36/85 (42%)
Frame = +1
Query: 160 WRALVSELLATAFLVWLGVSSVVPYKGKEAVVLSHPAFAFGFVVLGNAMAFGPTSGAHMN 339
W + +E L T ++ ++ + ++G + + A F + + H N
Sbjct: 16 WICVFAEYLGTLLFMFSVSAASLRWEGTPSTLEIALAAGFSMATVTQVFRWVSRPLVHAN 75
Query: 340 PAVTLAAALQGRMSPALAAAYTVAQ 414
PAVT+A+ L G S + Y + Q
Sbjct: 76 PAVTVASFLAGDTSLVASFLYVIVQ 100
>SB_48634| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1066
Score = 30.7 bits (66), Expect = 1.8
Identities = 15/45 (33%), Positives = 15/45 (33%)
Frame = +2
Query: 809 RXXPXPSFPPXPXXTPTPPXXXPXXXPPSRFNHLPXXHLPPXXXP 943
R P P PP P P PP P P S P P P
Sbjct: 859 RPRPRPRRPPPPPPPPPPPPPPPPPPPASSTGSTPGGDKVPSVGP 903
>SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42)
Length = 382
Score = 30.7 bits (66), Expect = 1.8
Identities = 16/42 (38%), Positives = 17/42 (40%)
Frame = +2
Query: 818 PXPSFPPXPXXTPTPPXXXPXXXPPSRFNHLPXXHLPPXXXP 943
P P PP P PTPP P P H+P L P P
Sbjct: 192 PAPPSPPIPTAPPTPP--MPETPLPPGSPHIPPAPLHPHIPP 231
>SB_53865| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 919
Score = 30.3 bits (65), Expect = 2.4
Identities = 20/67 (29%), Positives = 20/67 (29%), Gaps = 1/67 (1%)
Frame = +2
Query: 749 HSGHXXPXXXRXXAPXWAPXRXXPXPSFPPXPXXTPTPPXXXP-XXXPPSRFNHLPXXHL 925
H G AP P R P P PP P P P PP FN
Sbjct: 261 HEGDPYHGGPFNQAPPGFPPRWGPPPHMPPDYRGFPPPNFPPPDFSRPPPNFNDPAFQGR 320
Query: 926 PPXXXPP 946
PP P
Sbjct: 321 PPPFVRP 327
>SB_55889| Best HMM Match : REJ (HMM E-Value=5.4e-07)
Length = 2008
Score = 30.3 bits (65), Expect = 2.4
Identities = 19/60 (31%), Positives = 30/60 (50%)
Frame = +1
Query: 307 AFGPTSGAHMNPAVTLAAALQGRMSPALAAAYTVAQVXXXXXXXXXXXXVTPASALGTDE 486
A+G +S A++N VT A +S LAAA T++ +T +SAL ++E
Sbjct: 1234 AYGSSSFANLNITVTAPADPSAAVSSVLAAASTLSDSGDPTQAVSSLAMLTGSSALASEE 1293
>SB_51825| Best HMM Match : 7tm_1 (HMM E-Value=3.8e-08)
Length = 364
Score = 30.3 bits (65), Expect = 2.4
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +1
Query: 178 ELLATAFLVWLGVSSVVPYKGKEAVVLSHPAFAFGFVVLG 297
++LA A++V +GVS + G L+H F FG +++G
Sbjct: 114 KILAFAWIVPIGVSLIPLAYGTNVDTLAHQIFLFGILIVG 153
>SB_32451| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 924
Score = 30.3 bits (65), Expect = 2.4
Identities = 14/26 (53%), Positives = 14/26 (53%)
Frame = -3
Query: 944 GXGXRGXGGXXGGG*XGRGGXXXGXG 867
G G RG GG GGG RGG G G
Sbjct: 756 GGGYRGGGGYGGGGGGYRGGGGYGGG 781
>SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033)
Length = 867
Score = 30.3 bits (65), Expect = 2.4
Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 8/60 (13%)
Frame = +2
Query: 791 PXWAPXRXXPXPSFPPXPXXTPTPPXXXPXXXPPSRFNHL--------PXXHLPPXXXPP 946
P P R P P PP P +P+PP P PPS L P ++PP PP
Sbjct: 204 PPPPPPRPPPSPP-PPPPPPSPSPP-RPPPPPPPSPPRPLAAKLPEPPPIPNMPPTLPPP 261
Score = 28.3 bits (60), Expect = 9.6
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = +2
Query: 800 APXRXXPXPSFPPXPXXTPTPPXXXPXXXPP 892
+P + P PP P +P PP P PP
Sbjct: 197 SPSQITQPPPPPPRPPPSPPPPPPPPSPSPP 227
>SB_48525| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
Length = 569
Score = 29.9 bits (64), Expect = 3.2
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = -2
Query: 174 DQRSPPSPHPAGQTARRIFVCGGHVERARACRCGRS 67
DQR PP H A QT RI G +E A R ++
Sbjct: 113 DQRCPPGHHQAVQTPVRIKQTGKRIENIAASRSNKT 148
>SB_2559| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1324
Score = 29.9 bits (64), Expect = 3.2
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +2
Query: 818 PXPSFPPXPXXTPTPPXXXPXXXPP 892
P P PP P +P+PP P PP
Sbjct: 1159 PPPPPPPPPPSSPSPPPPPPPPPPP 1183
>SB_47784| Best HMM Match : Ank (HMM E-Value=1.4e-08)
Length = 593
Score = 29.5 bits (63), Expect = 4.2
Identities = 12/31 (38%), Positives = 13/31 (41%)
Frame = +2
Query: 803 PXRXXPXPSFPPXPXXTPTPPXXXPXXXPPS 895
P P P PP P P PP P PP+
Sbjct: 465 PPPPPPPPPPPPPPPPPPPPPPPFPPPPPPT 495
>SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1000
Score = 29.5 bits (63), Expect = 4.2
Identities = 16/53 (30%), Positives = 17/53 (32%)
Frame = +2
Query: 788 APXWAPXRXXPXPSFPPXPXXTPTPPXXXPXXXPPSRFNHLPXXHLPPXXXPP 946
AP P P PP P + PP PP P PP PP
Sbjct: 941 APSQPPPPGGNAPPPPPPPGGSAPPPGGGAPPLPPPPGGSAPPPPPPPPPPPP 993
>SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 669
Score = 29.5 bits (63), Expect = 4.2
Identities = 15/41 (36%), Positives = 16/41 (39%)
Frame = +2
Query: 824 PSFPPXPXXTPTPPXXXPXXXPPSRFNHLPXXHLPPXXXPP 946
PS PP TP PP PP + P PP PP
Sbjct: 355 PSPPPPTNNTPPPPPPTNKPPPPPPPTNGPPPPPPPTNGPP 395
Score = 28.3 bits (60), Expect = 9.6
Identities = 18/60 (30%), Positives = 18/60 (30%)
Frame = +2
Query: 767 PXXXRXXAPXWAPXRXXPXPSFPPXPXXTPTPPXXXPXXXPPSRFNHLPXXHLPPXXXPP 946
P P P P P PP P PP PP N P PP PP
Sbjct: 357 PPPPTNNTPPPPPPTNKPPPPPPPTNGPPPPPPPTNGPPPPPPPTNG-PPPPPPPTNGPP 415
>SB_41742| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1061
Score = 29.1 bits (62), Expect = 5.5
Identities = 13/23 (56%), Positives = 13/23 (56%)
Frame = -2
Query: 240 PFVRHHGADAEPHEERRGQQLGD 172
P VRHH A H ERR LGD
Sbjct: 697 PAVRHHKAAEGSHTERRAVHLGD 719
>SB_35885| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 476
Score = 29.1 bits (62), Expect = 5.5
Identities = 12/32 (37%), Positives = 13/32 (40%)
Frame = +2
Query: 818 PXPSFPPXPXXTPTPPXXXPXXXPPSRFNHLP 913
P P FP P PP P P RF + P
Sbjct: 427 PPPGFPQFQPPPPPPPSDAPWIERPKRFENNP 458
>SB_24403| Best HMM Match : BRF1 (HMM E-Value=1.2)
Length = 623
Score = 29.1 bits (62), Expect = 5.5
Identities = 22/81 (27%), Positives = 39/81 (48%)
Frame = -3
Query: 377 MRPCSAAASVTAGFMCAPDVGPNAIALPSTTNPKAKAGCDSTTASFPLYGTTELTPSHTR 198
MR + A+ TA +P V P + S+T A + S +SFP +G+T +
Sbjct: 505 MRTGNQASVYTASSQSSP-VRPTPVRANSSTG--ASSSSPSGYSSFPAHGSTGPNKACLS 561
Query: 197 NAVASSSETSARHHRRTQPDK 135
A+++ + +A+ R Q +K
Sbjct: 562 QAMSAGKQAAAKMALRKQLEK 582
>SB_23053| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 497
Score = 29.1 bits (62), Expect = 5.5
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Frame = -3
Query: 329 APDVGPNAIALPSTTNPKAKAGCDSTTASFPLYGTTELTPSHTRNAVASSSETSARH--H 156
APD + + L T P G TA +G ++ T H ++ S+ H
Sbjct: 332 APD---HPLGLSKRTAPDHTLGVSKRTAPDHPHGLSKRTAPHHPLGLSKSTAPDHPHGVS 388
Query: 155 RRTQPDKPRGVS 120
+RT PD P G+S
Sbjct: 389 KRTAPDHPHGLS 400
>SB_11627| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=2.6)
Length = 496
Score = 29.1 bits (62), Expect = 5.5
Identities = 19/56 (33%), Positives = 22/56 (39%), Gaps = 2/56 (3%)
Frame = +2
Query: 791 PXWAPXRXXPXPSFPPXPXXTPTPPXXXPXXXPPSRFNHLPXXHLP-PXXXPP-HS 952
P P P +PP P P P P P R+ P +LP P PP HS
Sbjct: 335 PPSPPRYPSSHPRYPPSPPRYPPSPPRYPSSHP--RYPPSPLRYLPSPIRYPPSHS 388
>SB_42616| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 512
Score = 28.7 bits (61), Expect = 7.3
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = -2
Query: 207 PHEERRGQQLGDQRSPPSPHPAGQTARRIFVCGGHVER-ARACRCGRSECRRRT 49
P ++R + D+ +PP+ Q RIFV ++ + ACR G S R RT
Sbjct: 357 PAVKQRAAEGTDEVTPPTLRVYAQQGSRIFVSMHSKDQGSTACRSGDSASRSRT 410
>SB_17543| Best HMM Match : Keratin_B2 (HMM E-Value=1.9)
Length = 229
Score = 28.7 bits (61), Expect = 7.3
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Frame = -1
Query: 355 PASRPG--SCAHPTSARTPSHCRAPQTRKQKRDVTARRPPS 239
P RP +C P +A T C +P T R V + PPS
Sbjct: 102 PCHRPTCKTCTSPVTALTCKTCTSPDTALHARRVLSLSPPS 142
>SB_15263| Best HMM Match : Jun (HMM E-Value=1.8)
Length = 315
Score = 28.7 bits (61), Expect = 7.3
Identities = 18/50 (36%), Positives = 18/50 (36%), Gaps = 3/50 (6%)
Frame = +2
Query: 803 PXRXXPXPSFPPXPXXT---PTPPXXXPXXXPPSRFNHLPXXHLPPXXXP 943
P R P P FP P T P PP P PP P PP P
Sbjct: 163 PPRTQPPPIFPIDPPRTQPPPIPPIDPPRTQPPPIPPIDPPRTQPPPIPP 212
>SB_3531| Best HMM Match : Cytomega_US3 (HMM E-Value=6.7)
Length = 519
Score = 28.7 bits (61), Expect = 7.3
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 216 QLRGAVQREGGRRAVTSRFCFRVCGARQCDG 308
+LRG Q+ GG+R + FR G Q DG
Sbjct: 457 ELRGEGQQNGGKRRRQGKVAFRRSGLLQADG 487
>SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07)
Length = 252
Score = 28.7 bits (61), Expect = 7.3
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = -3
Query: 950 SEGXGXRGXGGXXGGG*XGRGGXXXGXG 867
S+G G R GG GG G GG G G
Sbjct: 183 SQGGGYRSGGGGYGGSKGGYGGGSGGGG 210
>SB_49641| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 755
Score = 28.7 bits (61), Expect = 7.3
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = -3
Query: 365 SAAASVTAGFMCAPDVGPNAIALPSTTNPKA-KAGCDSTTASFPLYGTTELTPSHTRNAV 189
S S AG A PN+ + ST + +A TTA+ GTTE S + +
Sbjct: 270 STKTSTRAGLTKAATTSPNSSSSLSTGKARTTEATTTGTTAATATTGTTEALSSQSVISN 329
Query: 188 ASSSETSA 165
AS++ T++
Sbjct: 330 ASTTSTTS 337
>SB_12127| Best HMM Match : Endonuclease_NS (HMM E-Value=2.9e-35)
Length = 1577
Score = 28.7 bits (61), Expect = 7.3
Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Frame = +3
Query: 252 RAVTSRFCFRVCGARQCDGVRA---DVG-CAHEPGRDAGCRAAGPHV 380
RA R C R C +RQ + DV CA+EP A C GP V
Sbjct: 634 RATADRICER-CSSRQTKTIGTGDYDVSDCANEPRTTADCYIRGPKV 679
>SB_6245| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1000
Score = 28.7 bits (61), Expect = 7.3
Identities = 13/35 (37%), Positives = 14/35 (40%)
Frame = +2
Query: 800 APXRXXPXPSFPPXPXXTPTPPXXXPXXXPPSRFN 904
AP P PP P + PP P PSR N
Sbjct: 789 APAPFSAAPHLPPAPNISAEPPPPPPVARKPSRSN 823
>SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1597
Score = 28.3 bits (60), Expect = 9.6
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +2
Query: 818 PXPSFPPXPXXTPTPPXXXPXXXPP 892
P P PP P P PP P PP
Sbjct: 684 PPPPPPPPPPPPPPPPPPQPSTPPP 708
>SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4856
Score = 28.3 bits (60), Expect = 9.6
Identities = 16/49 (32%), Positives = 16/49 (32%), Gaps = 2/49 (4%)
Frame = +2
Query: 803 PXRXXPXPSFPPXPXXTPTPPXXXP--XXXPPSRFNHLPXXHLPPXXXP 943
P R P P P P TPP P PP P PP P
Sbjct: 616 PSRVPPQPETAPKPFPNITPPEVRPSLPGTPPETKTKPPLAPYPPKTSP 664
>SB_3524| Best HMM Match : ETS_PEA3_N (HMM E-Value=5.8)
Length = 357
Score = 28.3 bits (60), Expect = 9.6
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = -3
Query: 308 AIALPSTTNPKAKAGCDSTTAS-FPLYGTTELTPSHTRNAVASSSETSARHHRRTQPDKP 132
+ ALP NP GC + F G T + S RN ++ + HHRR ++P
Sbjct: 266 SFALPDNANP----GCYPWSKQIFRHEGPTHIRTSVHRNVGDAAEQDYKDHHRRRSHNRP 321
Query: 131 R 129
R
Sbjct: 322 R 322
>SB_49341| Best HMM Match : Rad21_Rec8_N (HMM E-Value=2.3)
Length = 549
Score = 28.3 bits (60), Expect = 9.6
Identities = 16/45 (35%), Positives = 19/45 (42%), Gaps = 5/45 (11%)
Frame = +2
Query: 833 PPXPXXTPTPPXXXPXXXPP-SRFNHLP----XXHLPPXXXPPHS 952
PP + TPP P PP S +H P H PP P H+
Sbjct: 382 PPVSTPSHTPPVSTPSHTPPVSTPSHTPPVSTPSHTPPVSTPSHT 426
Score = 28.3 bits (60), Expect = 9.6
Identities = 16/45 (35%), Positives = 19/45 (42%), Gaps = 5/45 (11%)
Frame = +2
Query: 833 PPXPXXTPTPPXXXPXXXPP-SRFNHLP----XXHLPPXXXPPHS 952
PP + TPP P PP S +H P H PP P H+
Sbjct: 436 PPVSTPSHTPPVSTPSHTPPVSTPSHTPPVSTPSHTPPVSTPSHT 480
>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2870
Score = 28.3 bits (60), Expect = 9.6
Identities = 12/31 (38%), Positives = 13/31 (41%)
Frame = +2
Query: 854 PTPPXXXPXXXPPSRFNHLPXXHLPPXXXPP 946
PTPP PP +P LPP PP
Sbjct: 949 PTPPPPTSALPPPIPATQVPPPPLPPLPPPP 979
>SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)
Length = 514
Score = 28.3 bits (60), Expect = 9.6
Identities = 14/41 (34%), Positives = 15/41 (36%)
Frame = +2
Query: 824 PSFPPXPXXTPTPPXXXPXXXPPSRFNHLPXXHLPPXXXPP 946
P PP P P PP PPS + P P PP
Sbjct: 364 PPPPPPPVGGPPPPPPPIEGRPPSSLGNPPPPPPPGRGAPP 404
>SB_30592| Best HMM Match : MAM (HMM E-Value=2.66247e-44)
Length = 667
Score = 28.3 bits (60), Expect = 9.6
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = +2
Query: 818 PXPSFPPXPXXTPTPPXXXPXXXPP 892
P P+ PP P TP P P PP
Sbjct: 430 PPPTPPPTPPPTPPPTTLPPTTQPP 454
>SB_28143| Best HMM Match : Neur_chan_memb (HMM E-Value=2.2)
Length = 356
Score = 28.3 bits (60), Expect = 9.6
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -3
Query: 581 ATRQTASTGREGRXPXXPRPARDTSLAXSVQPSSVPR 471
A+R T TGR+G P P P + + +P PR
Sbjct: 144 ASRDTVRTGRDGHKPQAPNPTQSRDRSRE-RPRDQPR 179
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,365,678
Number of Sequences: 59808
Number of extensions: 374057
Number of successful extensions: 2595
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 1669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2330
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2788625034
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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