Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_D21
(1255 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0028 + 182528-183852,183967-184127,184872-185116,185330-18... 34 0.20
10_07_0107 - 12936839-12937030,12937305-12937386,12937476-129375... 31 1.4
07_03_0792 - 21541301-21542143,21542426-21542661,21543177-215433... 30 3.3
12_01_0927 + 9196230-9196427,9196499-9197190,9197317-9198351,919... 30 4.4
06_03_1310 + 29238644-29240260 30 4.4
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336... 29 5.8
06_03_0905 + 25843547-25844314 29 5.8
04_02_0026 + 8708765-8710935,8711021-8711272,8711353-8711463,871... 29 7.7
>05_01_0028 +
182528-183852,183967-184127,184872-185116,185330-186073
Length = 824
Score = 34.3 bits (75), Expect = 0.20
Identities = 18/57 (31%), Positives = 19/57 (33%)
Frame = +3
Query: 753 PLPXXPXPXLXXPPXPSXSQPXRXRILXXPPXXXXXPTXTAPPXXXSXXPXXPXAXP 923
PLP PP P +P R PP PT PP S P P P
Sbjct: 61 PLPTPTVTTPTPPPPPPAPRPPRRHHRIPPPPPPLLPTPPPPPASISPTPAPPLPPP 117
Score = 32.7 bits (71), Expect = 0.62
Identities = 20/57 (35%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
Frame = +3
Query: 756 LPXXPXPXLXXPPXPSXS-QPXRXRILXXPPXXXXXPTXTAPPXXXSXXPXXPXAXP 923
+P P P L PP P S P L PP PT T S P P A P
Sbjct: 88 IPPPPPPLLPTPPPPPASISPTPAPPLPPPPAPAPPPTPTPKFPSSSANPSPPDAYP 144
>10_07_0107 -
12936839-12937030,12937305-12937386,12937476-12937586,
12937667-12937918,12938004-12940237,12940328-12940525
Length = 1022
Score = 31.5 bits (68), Expect = 1.4
Identities = 15/47 (31%), Positives = 18/47 (38%)
Frame = +3
Query: 789 PPXPSXSQPXRXRILXXPPXXXXXPTXTAPPXXXSXXPXXPXAXPLR 929
P PS +P R L PP P PP S P P P++
Sbjct: 568 PAPPSPPEPPSPRHLPSPPPLRSPPRQPTPPPSPSQQPPLPTPQPVQ 614
>07_03_0792 -
21541301-21542143,21542426-21542661,21543177-21543373,
21543459-21544173,21544250-21544892,21545970-21546139,
21546442-21546943
Length = 1101
Score = 30.3 bits (65), Expect = 3.3
Identities = 19/64 (29%), Positives = 20/64 (31%), Gaps = 3/64 (4%)
Frame = +3
Query: 753 PLPXXPXPXLXXPPXPSXSQPXRXRILXXPPXXXXXPTXTA---PPXXXSXXPXXPXAXP 923
P+ P P L PP P P PP P A PP S P P P
Sbjct: 557 PVMPPPIPKLLSPPAPQAPMPPLKASPVPPPEPSPPPAPKAAPPPPPPKSTGPGPPRPPP 616
Query: 924 LRXP 935
P
Sbjct: 617 PAMP 620
>12_01_0927 +
9196230-9196427,9196499-9197190,9197317-9198351,
9198437-9198688,9198769-9198879,9198969-9199050,
9199325-9199516
Length = 853
Score = 29.9 bits (64), Expect = 4.4
Identities = 17/53 (32%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Frame = +3
Query: 789 PPXPSXSQPXRXRILXXPPXXXXXPTXTAPPXXXSXXPXXPXAXPLR-XPTRL 944
P PS +P R PP P PP S P P P++ PT L
Sbjct: 399 PAPPSPPEPPSPRHPPSPPPLRSPPRQPTPPPSPSQQPPLPAPQPVQASPTSL 451
>06_03_1310 + 29238644-29240260
Length = 538
Score = 29.9 bits (64), Expect = 4.4
Identities = 19/66 (28%), Positives = 23/66 (34%)
Frame = +3
Query: 726 TEXXXXSLXPLPXXPXPXLXXPPXPSXSQPXRXRILXXPPXXXXXPTXTAPPXXXSXXPX 905
+E S+ P P PP S S P PP PT T PP + P
Sbjct: 417 SESPKSSMPPSTSPPSSHGASPPSSSSSPPTEHPGYVLPPLTPPPPT-TTPPGHHAPVPG 475
Query: 906 XPXAXP 923
P + P
Sbjct: 476 TPSSPP 481
>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
33643-34147,34250-34358,34436-34548,34619-34806,
35481-36129,36169-36691,36760-36911,37042-37141,
37301-37416
Length = 1530
Score = 29.5 bits (63), Expect = 5.8
Identities = 20/60 (33%), Positives = 22/60 (36%), Gaps = 2/60 (3%)
Frame = +3
Query: 753 PLPXXPXPXLX--XPPXPSXSQPXRXRILXXPPXXXXXPTXTAPPXXXSXXPXXPXAXPL 926
PL P P L PP PS S P + + PP P PP P P PL
Sbjct: 1133 PLDAPPPPPLPEGPPPLPSDSPPCQPPLPPSPPPATPPP----PPPLSPSLPPPPPPPPL 1188
>06_03_0905 + 25843547-25844314
Length = 255
Score = 29.5 bits (63), Expect = 5.8
Identities = 13/43 (30%), Positives = 16/43 (37%)
Frame = +3
Query: 753 PLPXXPXPXLXXPPXPSXSQPXRXRILXXPPXXXXXPTXTAPP 881
P P P L PP + P + + PP P T PP
Sbjct: 70 PSPVTRPPPLVAPPKVPVTHPPKGPVTRPPPVTYPTPPVTTPP 112
>04_02_0026 +
8708765-8710935,8711021-8711272,8711353-8711463,
8711553-8711634,8711909-8712100
Length = 935
Score = 29.1 bits (62), Expect = 7.7
Identities = 14/47 (29%), Positives = 17/47 (36%)
Frame = +3
Query: 789 PPXPSXSQPXRXRILXXPPXXXXXPTXTAPPXXXSXXPXXPXAXPLR 929
P PS +P R PP P PP S P P P++
Sbjct: 481 PAPPSPPEPPSPRHQPSPPPLRSPPRQPTPPPSPSQQPPLPAPQPVQ 527
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,132,113
Number of Sequences: 37544
Number of extensions: 84219
Number of successful extensions: 365
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 326
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3876004116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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