Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_D21
(1255 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.9
SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05) 31 2.5
SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013) 31 2.5
SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 3.4
SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10) 30 4.5
SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33) 30 4.5
>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2870
Score = 31.1 bits (67), Expect = 1.9
Identities = 16/53 (30%), Positives = 18/53 (33%)
Frame = +3
Query: 753 PLPXXPXPXLXXPPXPSXSQPXRXRILXXPPXXXXXPTXTAPPXXXSXXPXXP 911
PLP P P PP P Q R + P T PP + P P
Sbjct: 911 PLPLAPEPPPPLPPPPPPIQTTRPTVPTTPTTQASTTRPTPPPPTSALPPPIP 963
>SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)
Length = 480
Score = 30.7 bits (66), Expect = 2.5
Identities = 23/71 (32%), Positives = 24/71 (33%), Gaps = 8/71 (11%)
Frame = +3
Query: 753 PLPXXPXPXLXXPPXPSXSQ------PXRXRILXXPPXXXXXPTXT--APPXXXSXXPXX 908
P P P PP PS Q P R +I PP PT T APP P
Sbjct: 308 PAPPPPLNATPPPPPPSRDQVPLPPPPLRGQIAPPPPPISKPPTSTRSAPPPPPGRAPQP 367
Query: 909 PXAXPLRXPTR 941
P P R
Sbjct: 368 LGGPPPPPPGR 378
>SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)
Length = 392
Score = 30.7 bits (66), Expect = 2.5
Identities = 23/71 (32%), Positives = 24/71 (33%), Gaps = 8/71 (11%)
Frame = +3
Query: 753 PLPXXPXPXLXXPPXPSXSQ------PXRXRILXXPPXXXXXPTXT--APPXXXSXXPXX 908
P P P PP PS Q P R +I PP PT T APP P
Sbjct: 220 PAPPPPLNATPPPPPPSRDQVPLPPPPLRGQIAPPPPPISKPPTSTRSAPPPPPGRAPQP 279
Query: 909 PXAXPLRXPTR 941
P P R
Sbjct: 280 LGGPPPPPPGR 290
>SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 290
Score = 30.3 bits (65), Expect = 3.4
Identities = 17/61 (27%), Positives = 17/61 (27%)
Frame = +3
Query: 753 PLPXXPXPXLXXPPXPSXSQPXRXRILXXPPXXXXXPTXTAPPXXXSXXPXXPXAXPLRX 932
P P P P P P P L PP P PP P P P
Sbjct: 134 PPPNAPYPPSPNAPYPPPPNPPYPPPLYPPPPNPPPPNAPYPPPPYPPPPNPPYPPPPNP 193
Query: 933 P 935
P
Sbjct: 194 P 194
Score = 29.9 bits (64), Expect = 4.5
Identities = 16/59 (27%), Positives = 17/59 (28%)
Frame = +3
Query: 759 PXXPXPXLXXPPXPSXSQPXRXRILXXPPXXXXXPTXTAPPXXXSXXPXXPXAXPLRXP 935
P P P PP P+ P PP P PP P P P P
Sbjct: 123 PYPPPPNPPYPPPPNAPYPPSPNAPYPPPPNPPYPPPLYPPPPNPPPPNAPYPPPPYPP 181
>SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)
Length = 514
Score = 29.9 bits (64), Expect = 4.5
Identities = 18/66 (27%), Positives = 20/66 (30%)
Frame = +3
Query: 753 PLPXXPXPXLXXPPXPSXSQPXRXRILXXPPXXXXXPTXTAPPXXXSXXPXXPXAXPLRX 932
P P P PP PS P + PP PP P P R
Sbjct: 326 PPPPPPSRSSQRPPPPSRGAPPPPSMGMAPPPVGGAAPPPPPPPPVGGPPPPPPPIEGRP 385
Query: 933 PTRLXN 950
P+ L N
Sbjct: 386 PSSLGN 391
>SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33)
Length = 457
Score = 29.9 bits (64), Expect = 4.5
Identities = 18/64 (28%), Positives = 18/64 (28%)
Frame = +3
Query: 753 PLPXXPXPXLXXPPXPSXSQPXRXRILXXPPXXXXXPTXTAPPXXXSXXPXXPXAXPLRX 932
P P P P PP P P PP P PP P P P
Sbjct: 371 PPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPPPPPPPPP 430
Query: 933 PTRL 944
P L
Sbjct: 431 PPAL 434
Score = 29.5 bits (63), Expect = 5.9
Identities = 17/61 (27%), Positives = 17/61 (27%)
Frame = +3
Query: 753 PLPXXPXPXLXXPPXPSXSQPXRXRILXXPPXXXXXPTXTAPPXXXSXXPXXPXAXPLRX 932
P P P P PP P P PP P PP P P P
Sbjct: 366 PPPPPPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPPPP 425
Query: 933 P 935
P
Sbjct: 426 P 426
Score = 29.5 bits (63), Expect = 5.9
Identities = 17/61 (27%), Positives = 17/61 (27%)
Frame = +3
Query: 753 PLPXXPXPXLXXPPXPSXSQPXRXRILXXPPXXXXXPTXTAPPXXXSXXPXXPXAXPLRX 932
P P P P PP P P PP P PP P P P
Sbjct: 369 PPPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPPPPPPP 428
Query: 933 P 935
P
Sbjct: 429 P 429
Score = 29.1 bits (62), Expect = 7.8
Identities = 18/64 (28%), Positives = 18/64 (28%)
Frame = +3
Query: 753 PLPXXPXPXLXXPPXPSXSQPXRXRILXXPPXXXXXPTXTAPPXXXSXXPXXPXAXPLRX 932
P P P P PP P P PP P PP P P
Sbjct: 380 PPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPPPPPPPPPPPALRLACA 439
Query: 933 PTRL 944
P RL
Sbjct: 440 PPRL 443
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,375,012
Number of Sequences: 59808
Number of extensions: 70257
Number of successful extensions: 180
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 16,821,457
effective HSP length: 84
effective length of database: 11,797,585
effective search space used: 3928595805
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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