Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_D21
         (1255 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098500-3|ABD94103.1|  774|Caenorhabditis elegans Temporarily a...    32   0.98 
AF098500-2|AAC67399.2|  996|Caenorhabditis elegans Temporarily a...    32   0.98 
U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (gr...    29   9.1  

>AF098500-3|ABD94103.1|  774|Caenorhabditis elegans Temporarily
            assigned gene nameprotein 343, isoform b protein.
          Length = 774

 Score = 31.9 bits (69), Expect = 0.98
 Identities = 23/81 (28%), Positives = 29/81 (35%)
 Frame = +3

Query: 774  PXLXXPPXPSXSQPXRXRILXXPPXXXXXPTXTAPPXXXSXXPXXPXAXPLRXPTRLXNX 953
            P L  PP P  + P +      PP     PT   PP   S  P  P + P+  P  L + 
Sbjct: 73   PPLPPPPLPLSNPPAKPT----PPPPPPKPTIRPPPIPASPPPRPPASEPVGIP--LYSE 126

Query: 954  XRXX*XXXPXXXRSPXLPXXF 1016
             +      P    SP  P  F
Sbjct: 127  KQHQQQLRPTTAVSPPKPPSF 147


>AF098500-2|AAC67399.2|  996|Caenorhabditis elegans Temporarily
            assigned gene nameprotein 343, isoform a protein.
          Length = 996

 Score = 31.9 bits (69), Expect = 0.98
 Identities = 23/81 (28%), Positives = 29/81 (35%)
 Frame = +3

Query: 774  PXLXXPPXPSXSQPXRXRILXXPPXXXXXPTXTAPPXXXSXXPXXPXAXPLRXPTRLXNX 953
            P L  PP P  + P +      PP     PT   PP   S  P  P + P+  P  L + 
Sbjct: 295  PPLPPPPLPLSNPPAKPT----PPPPPPKPTIRPPPIPASPPPRPPASEPVGIP--LYSE 348

Query: 954  XRXX*XXXPXXXRSPXLPXXF 1016
             +      P    SP  P  F
Sbjct: 349  KQHQQQLRPTTAVSPPKPPSF 369


>U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (grd
           related) protein 4 protein.
          Length = 210

 Score = 28.7 bits (61), Expect = 9.1
 Identities = 16/58 (27%), Positives = 17/58 (29%), Gaps = 1/58 (1%)
 Frame = +3

Query: 753 PLPXXPXPXLXXPPXPSXSQP-XRXRILXXPPXXXXXPTXTAPPXXXSXXPXXPXAXP 923
           P P  P P    PP P    P    +    PP     P    PP      P  P   P
Sbjct: 29  PCPPPPPPMCAPPPLPCPPPPICPPQFCPPPPMCPPPPPPPPPPMCPPPPPPMPSYSP 86


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,371,886
Number of Sequences: 27780
Number of extensions: 52828
Number of successful extensions: 117
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3485108972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)