Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_D20
         (935 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma...    46   0.001
UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru...    41   0.052
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob...    38   0.48 

>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
           Magnoliophyta|Rep: Putative reverse transcriptase -
           Zingiber officinale (Ginger)
          Length = 49

 Score = 46.0 bits (104), Expect = 0.001
 Identities = 19/23 (82%), Positives = 20/23 (86%)
 Frame = +3

Query: 618 SAXMNRPTXGERRFXYWALFRFL 686
           +A MNRPT GERRF YWALFRFL
Sbjct: 25  AALMNRPTRGERRFAYWALFRFL 47


>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
           Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
           (SV40)
          Length = 364

 Score = 40.7 bits (91), Expect = 0.052
 Identities = 16/19 (84%), Positives = 19/19 (100%)
 Frame = +3

Query: 423 DPNMIKYIDEFGQTTTKMQ 479
           DP+MI+YIDEFGQTTT+MQ
Sbjct: 346 DPDMIRYIDEFGQTTTRMQ 364


>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
           Enterobacteriaceae|Rep: Lactose operon repressor -
           Escherichia coli (strain K12)
          Length = 360

 Score = 37.5 bits (83), Expect = 0.48
 Identities = 17/18 (94%), Positives = 17/18 (94%)
 Frame = -3

Query: 672 APNTQTASPRALADSXMQ 619
           APNTQTASPRALADS MQ
Sbjct: 331 APNTQTASPRALADSLMQ 348


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 538,376,878
Number of Sequences: 1657284
Number of extensions: 6933880
Number of successful extensions: 10853
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10853
length of database: 575,637,011
effective HSP length: 101
effective length of database: 408,251,327
effective search space used: 85732778670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)