Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_D19
         (902 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit |Schizosa...    29   0.90 
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    28   1.6  
SPAC23D3.03c |||GTPase activating protein |Schizosaccharomyces p...    27   3.6  
SPAP27G11.08c |meu32|mug11|sequence orphan|Schizosaccharomyces p...    27   3.6  
SPBC28E12.02 ||SPBC9B6.13|RNA-binding protein|Schizosaccharomyce...    26   6.4  
SPCC1020.03 |||mitochondrial iron ion transporter|Schizosaccharo...    26   6.4  
SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ...    26   8.4  
SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity ...    26   8.4  

>SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 589

 Score = 29.1 bits (62), Expect = 0.90
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +3

Query: 273 ETMTREMSAKEILNDFKENYIKFRKLLDEDSKNDPENAP 389
           E + + +  +    +F E   +F   LDED+ NDPE +P
Sbjct: 9   EELYKALGREYTTQEFDELCFQFGIELDEDTTNDPERSP 47


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2104

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -3

Query: 501 DHSIEFGIIXQGNLQSLRSLKKHTYYSIFL 412
           +H  +  I+ Q NL+ L+ LK H ++++FL
Sbjct: 794 NHRQDAAILLQHNLRQLKLLKPHPWWNLFL 823


>SPAC23D3.03c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 472

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 14/59 (23%), Positives = 31/59 (52%)
 Frame = +1

Query: 673 RDDPEKAKASLVKAKTLYXDFKCTLQMPLPIEVIINYVGXTLIDDFMYLEKSYTLTLXL 849
           +++PE A   L+K + +  DF   L   L I ++   +   ++D +++ E S+ + L +
Sbjct: 369 KNEPELATHLLIKLELVPDDFVYPLLRKLFIPMVSPEIASRILDCYVFEEDSFFIQLLM 427


>SPAP27G11.08c |meu32|mug11|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 392

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 738 VHSTDAITYRSHYKLCWGXFNR*FYVF 818
           +H  +   YR HY++C G  N+  YVF
Sbjct: 357 MHLENVFLYR-HYRVCVGFLNKQIYVF 382


>SPBC28E12.02 ||SPBC9B6.13|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 663

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 15/62 (24%), Positives = 28/62 (45%)
 Frame = +3

Query: 270 FETMTREMSAKEILNDFKENYIKFRKLLDEDSKNDPENAPYFSKYKAKEILNNMYVFLKT 449
           FE +  EM    ++ +   ++I+F +   E  +  PEN+    K  +  I N+    L+ 
Sbjct: 319 FEFLAYEMDELRLIMEENSSFIRFPEYFKEGGETSPENSKV--KIYSSSIANSEKTALRL 376

Query: 450 LK 455
            K
Sbjct: 377 AK 378


>SPCC1020.03 |||mitochondrial iron ion
           transporter|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 397

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +1

Query: 559 SEKSLNEAVDLLLENALKPEIVVTLINVYXNIGI 660
           S+K + E V  L +    PE+ +  + +Y NIG+
Sbjct: 54  SDKEMLELVKALKKEGKSPELKLAWLGLYSNIGL 87


>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +3

Query: 291 MSAKEILNDFKENYIKFRKLLDEDSKNDPENAPYFSKYKAK 413
           ++ K ++   KE Y   +KL+DE  + +P N+    + K K
Sbjct: 571 LTPKVVVPSHKETYTDEKKLIDELDRVNPLNSSQLLRSKRK 611


>SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 408

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = +3

Query: 267 KFETMTREMS-AKEILNDFKENYIKFRKLLDEDSKNDPENAPYFSKYKAKEILNNM 431
           KF     E++ A+ +L  F E     +K++DE+  +  +++PYF  +  +E  N +
Sbjct: 95  KFRKSIVELAKARNMLLMFVEVVCTNQKIIDENITDMCQHSPYFKSFPFEESKNKI 150


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,015,345
Number of Sequences: 5004
Number of extensions: 56057
Number of successful extensions: 164
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)