Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_D19
         (902 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nucl...    32   0.49 

>AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nuclear
            anchorage protein1 protein.
          Length = 8545

 Score = 32.3 bits (70), Expect = 0.49
 Identities = 17/64 (26%), Positives = 40/64 (62%), Gaps = 3/64 (4%)
 Frame = +3

Query: 285  REMSAKEILNDFKENYIKFRKLL---DEDSKNDPENAPYFSKYKAKEILNNMYVFLKTLK 455
            ++ S +E++++     ++ + L+   +E +KN  EN P   K KA+++++N+  F+K ++
Sbjct: 3027 KKKSPQEMIDELSAKVVEAKALIPKIEEAAKN--ENLPADDKPKAEQLVSNLEAFVKDVE 3084

Query: 456  TEGS 467
            T+ S
Sbjct: 3085 TQVS 3088



 Score = 32.3 bits (70), Expect = 0.49
 Identities = 17/64 (26%), Positives = 40/64 (62%), Gaps = 3/64 (4%)
 Frame = +3

Query: 285  REMSAKEILNDFKENYIKFRKLL---DEDSKNDPENAPYFSKYKAKEILNNMYVFLKTLK 455
            ++ S +E++++     ++ + L+   +E +KN  EN P   K KA+++++N+  F+K ++
Sbjct: 3930 KKKSPQEMIDELSAKVVEAKALIPKIEEAAKN--ENLPADDKPKAEQLVSNLEAFVKDVE 3987

Query: 456  TEGS 467
            T+ S
Sbjct: 3988 TQVS 3991



 Score = 32.3 bits (70), Expect = 0.49
 Identities = 17/64 (26%), Positives = 40/64 (62%), Gaps = 3/64 (4%)
 Frame = +3

Query: 285  REMSAKEILNDFKENYIKFRKLL---DEDSKNDPENAPYFSKYKAKEILNNMYVFLKTLK 455
            ++ S +E++++     ++ + L+   +E +KN  EN P   K KA+++++N+  F+K ++
Sbjct: 4884 KKKSPQEMIDELSAKVVEAKALIPKIEEAAKN--ENLPADDKPKAEQLVSNLEAFVKDVE 4941

Query: 456  TEGS 467
            T+ S
Sbjct: 4942 TQVS 4945



 Score = 32.3 bits (70), Expect = 0.49
 Identities = 17/64 (26%), Positives = 40/64 (62%), Gaps = 3/64 (4%)
 Frame = +3

Query: 285  REMSAKEILNDFKENYIKFRKLL---DEDSKNDPENAPYFSKYKAKEILNNMYVFLKTLK 455
            ++ S +E++++     ++ + L+   +E +KN  EN P   K KA+++++N+  F+K ++
Sbjct: 5787 KKKSPQEMIDELSAKVVEAKALIPKIEEAAKN--ENLPADDKPKAEQLVSNLEAFVKDVE 5844

Query: 456  TEGS 467
            T+ S
Sbjct: 5845 TQVS 5848



 Score = 32.3 bits (70), Expect = 0.49
 Identities = 17/64 (26%), Positives = 40/64 (62%), Gaps = 3/64 (4%)
 Frame = +3

Query: 285  REMSAKEILNDFKENYIKFRKLL---DEDSKNDPENAPYFSKYKAKEILNNMYVFLKTLK 455
            ++ S +E++++     ++ + L+   +E +KN  EN P   K KA+++++N+  F+K ++
Sbjct: 6690 KKKSPQEMIDELSAKVVEAKALIPKIEEAAKN--ENLPADDKPKAEQLVSNLEAFVKDVE 6747

Query: 456  TEGS 467
            T+ S
Sbjct: 6748 TQVS 6751



 Score = 32.3 bits (70), Expect = 0.49
 Identities = 17/64 (26%), Positives = 40/64 (62%), Gaps = 3/64 (4%)
 Frame = +3

Query: 285  REMSAKEILNDFKENYIKFRKLL---DEDSKNDPENAPYFSKYKAKEILNNMYVFLKTLK 455
            ++ S +E++++     ++ + L+   +E +KN  EN P   K KA+++++N+  F+K ++
Sbjct: 7593 KKKSPQEMIDELSAKVVEAKALIPKIEEAAKN--ENLPADDKPKAEQLVSNLEAFVKDVE 7650

Query: 456  TEGS 467
            T+ S
Sbjct: 7651 TQVS 7654


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,273,310
Number of Sequences: 27780
Number of extensions: 298270
Number of successful extensions: 728
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2297313942
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)