Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_D19
         (902 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    27   0.31 
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    23   5.0  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    23   5.0  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    23   5.0  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   6.7  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    22   8.8  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 26.6 bits (56), Expect = 0.31
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +3

Query: 336 KFRKLLDEDSKNDPENAPYFSKYKAKEILNNMYVFLKTL 452
           KF + +DE + ND +   + +K  A   LN++Y    TL
Sbjct: 366 KFPRNIDEYNNNDLDTKKWNNKISALRALNDLYNVKNTL 404


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 499 IGYVLLNIGIVEMDTEEPTASEKSLNE 579
           +G   L +G+ +MD+ EP  SE    E
Sbjct: 70  LGVKQLIVGVNKMDSTEPPYSETRFEE 96


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 499 IGYVLLNIGIVEMDTEEPTASEKSLNE 579
           +G   L +G+ +MD+ EP  SE    E
Sbjct: 86  LGVKQLIVGVNKMDSTEPPYSETRFEE 112


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 499 IGYVLLNIGIVEMDTEEPTASEKSLNE 579
           +G   L +G+ +MD+ EP  SE    E
Sbjct: 143 LGVKQLIVGVNKMDSTEPPYSETRFEE 169


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +2

Query: 434 CFFKDLKD*RFPXSMIPNSML 496
           CFFK+ K   F    IPN  L
Sbjct: 92  CFFKNAKKVTFHEMSIPNHYL 112


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +3

Query: 300 KEILNDFKENYIKFRKLLDEDSKND 374
           K  ++++  +  KF++L +EDSK D
Sbjct: 2   KRNISNYSHHDEKFKQLRNEDSKID 26


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,952
Number of Sequences: 438
Number of extensions: 3608
Number of successful extensions: 20
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29267238
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)