Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_D19
         (902 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g47400.1 68418.m05841 hypothetical protein                          32   0.60 
At3g62830.1 68416.m07059 NAD-dependent epimerase/dehydratase fam...    29   5.6  
At2g26270.1 68415.m03153 expressed protein ; expression supporte...    28   9.7  
At1g08400.1 68414.m00929 chromosome structural maintenance prote...    28   9.7  

>At5g47400.1 68418.m05841 hypothetical protein 
          Length = 665

 Score = 31.9 bits (69), Expect = 0.60
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 106 EKXLCEKHTESSYVHXEWSKSLK 38
           E  LCE + + SY+H  W+K LK
Sbjct: 623 EDGLCESNADGSYLHENWNKDLK 645


>At3g62830.1 68416.m07059 NAD-dependent epimerase/dehydratase family
           protein similar to UDP-glucuronic acid decarboxylase
           Uxs1p from Filobasidiella neoformans GI:14318327;
           contains Pfam profile PF01370 NAD dependent
           epimerase/dehydratase family; contains non-consensus CA
           donor splice site at exon 1 and TA acceptor splice site
           at exon 2
          Length = 445

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +1

Query: 616 EIVVTLINVYXNIGILWSNRDDPEKAKASLVKAKTLY-XDFKCTLQMPLPIEV 771
           ++V   I+   NI    +  DDP K K  + KAK L   + K +L+  LP+ V
Sbjct: 366 KVVQETIDPNANIEFRPNTEDDPHKRKPDITKAKELLGWEPKVSLRQGLPLMV 418


>At2g26270.1 68415.m03153 expressed protein ; expression supported
           by MPSS
          Length = 470

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
 Frame = -3

Query: 591 EINSFIETLFTSSRFLCIH---FYYTNVQQNISDHSIEFGI 478
           E+     T F+ S F C+    + Y   Q+N+ DH IE  I
Sbjct: 370 EMGPSSRTYFSDSGFTCLQILDYIYRFYQENLPDHEIEVAI 410


>At1g08400.1 68414.m00929 chromosome structural maintenance
           protein-related contains weak similarity to
           RAD50-interacting protein 1 [Homo sapiens]
           gi|11967435|gb|AAG42101
          Length = 804

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 425 IQYFFSFVLRKIWCIFRIILAVFVK 351
           IQ+  +   R +WCIF+I+L  F K
Sbjct: 527 IQFIRATATRFLWCIFKILLLEFKK 551


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,806,577
Number of Sequences: 28952
Number of extensions: 259877
Number of successful extensions: 601
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2129873112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)