Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_D18
         (887 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ450529-1|ABE27283.1|  277|Drosophila melanogaster L23A ribosom...    52   1e-06
BT029645-1|ABL75704.1|  269|Drosophila melanogaster IP17216p pro...    52   1e-06
AE014296-329|AAF47545.1|  277|Drosophila melanogaster CG7977-PA ...    52   1e-06
AF080130-1|AAD19340.1|  269|Drosophila melanogaster ribosomal pr...    46   9e-05

>DQ450529-1|ABE27283.1|  277|Drosophila melanogaster L23A ribosomal
           protein naturalvariant protein.
          Length = 277

 Score = 52.0 bits (119), Expect = 1e-06
 Identities = 22/41 (53%), Positives = 27/41 (65%)
 Frame = +2

Query: 722 ALKAQRKVVXGXHGKRVRKIXXSVHFRRPKTFEPPXHPKYP 844
           A K Q+K++ G  G R RKI  +VHFRRP T + P  PKYP
Sbjct: 142 AKKVQKKIIKGAFGTRARKIRANVHFRRPTTLKLPRSPKYP 182


>BT029645-1|ABL75704.1|  269|Drosophila melanogaster IP17216p
           protein.
          Length = 269

 Score = 52.0 bits (119), Expect = 1e-06
 Identities = 22/41 (53%), Positives = 27/41 (65%)
 Frame = +2

Query: 722 ALKAQRKVVXGXHGKRVRKIXXSVHFRRPKTFEPPXHPKYP 844
           A K Q+K++ G  G R RKI  +VHFRRP T + P  PKYP
Sbjct: 134 AKKVQKKIIKGAFGTRARKIRTNVHFRRPTTLKLPRSPKYP 174


>AE014296-329|AAF47545.1|  277|Drosophila melanogaster CG7977-PA
           protein.
          Length = 277

 Score = 52.0 bits (119), Expect = 1e-06
 Identities = 22/41 (53%), Positives = 27/41 (65%)
 Frame = +2

Query: 722 ALKAQRKVVXGXHGKRVRKIXXSVHFRRPKTFEPPXHPKYP 844
           A K Q+K++ G  G R RKI  +VHFRRP T + P  PKYP
Sbjct: 142 AKKVQKKIIKGAFGTRARKIRTNVHFRRPTTLKLPRSPKYP 182


>AF080130-1|AAD19340.1|  269|Drosophila melanogaster ribosomal
           protein L23a protein.
          Length = 269

 Score = 45.6 bits (103), Expect = 9e-05
 Identities = 21/41 (51%), Positives = 26/41 (63%)
 Frame = +2

Query: 722 ALKAQRKVVXGXHGKRVRKIXXSVHFRRPKTFEPPXHPKYP 844
           A K Q+K++    G R RKI  +VHFRRP T + P  PKYP
Sbjct: 135 AKKVQKKIIKAF-GTRARKIRTNVHFRRPTTLKLPRSPKYP 174


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,742,238
Number of Sequences: 53049
Number of extensions: 224440
Number of successful extensions: 404
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 404
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4332305172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)