Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_D17
         (875 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40684| Best HMM Match : NIF (HMM E-Value=0)                         30   2.8  
SB_35344| Best HMM Match : PRP1_N (HMM E-Value=0)                      30   2.8  
SB_40678| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_1865| Best HMM Match : DUF1168 (HMM E-Value=5)                      29   6.5  
SB_8644| Best HMM Match : 7tm_1 (HMM E-Value=0)                        28   8.6  
SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  

>SB_40684| Best HMM Match : NIF (HMM E-Value=0)
          Length = 402

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
 Frame = +3

Query: 348 MLPRGETFVHTNELQMEEAVKVFRVLYYAKDFDVFMRTACWMR---ERINGGMFVYAFTA 518
           +L   ET VH +  ++E+A   F V Y    + VF+RT   ++   ER++    V  FTA
Sbjct: 220 VLDLDETLVHCSLNKLEDATLSFPVSYQDITYQVFVRTRPHLKYFLERVSKVFEVILFTA 279

Query: 519 A 521
           +
Sbjct: 280 S 280


>SB_35344| Best HMM Match : PRP1_N (HMM E-Value=0)
          Length = 437

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
 Frame = -1

Query: 749 SFWDKERRTPLRQSITTK--LSSVTRDAVVFPEDRVLGGFSHLHHKGFTDDMAVNEEVGI 576
           +F+   R TP+  S+     L+  T +A+     +VLGGF        T   A      +
Sbjct: 183 AFFRSHRFTPVPDSVINSALLAGGTENALS-GRQQVLGGFQTPFPGAMTPGYAT-PSADL 240

Query: 575 DLVRSGQVETLAVGSVEARGSKSVDEHASVDP 480
           DL++ G+     VG    + S SV     VDP
Sbjct: 241 DLIKIGEARKSLVGVKLDQASDSVTGQTVVDP 272


>SB_40678| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 236

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 16/59 (27%), Positives = 29/59 (49%)
 Frame = +3

Query: 237 MFEDIKEIAKEYNIEKSCDKYMNVDVVKQFMEMYKMGMLPRGETFVHTNELQMEEAVKV 413
           + ++I  I K++   K  +K MN++ +   MEMY   ML    TF+ + +       K+
Sbjct: 71  IMQEIGAIVKKHT-HKGEEKQMNINAIPNNMEMYMAFMLGNHLTFIDSFQFMSSSLEKL 128


>SB_1865| Best HMM Match : DUF1168 (HMM E-Value=5)
          Length = 289

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 24/101 (23%), Positives = 42/101 (41%), Gaps = 8/101 (7%)
 Frame = -1

Query: 710 SITTKLSSVTRDAVVFPEDRV-------LGGFSHLHHKGFTDDMAVN-EEVGIDLVRSGQ 555
           +I T+++  TR   + PE  +       +    + H KG  + MA   +E  I    +  
Sbjct: 28  TINTEVTRRTRQHCILPEFHLQFHLVANMSRHFNKHEKGDQNPMATELDEKAISSRTTSA 87

Query: 554 VETLAVGSVEARGSKSVDEHASVDPFSHPARSPHENIEVLS 432
             T    S  ++ S++ D H S    SH +R P  +   +S
Sbjct: 88  NRTRRPDSYRSKNSENTDSHRSRKSESHQSRKPDSHRSCIS 128


>SB_8644| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 1011

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +3

Query: 459 TACWMRERINGGMFVYAFTAACFHR 533
           TAC+  + I+GG+ V+++  + FHR
Sbjct: 836 TACFWGQLISGGITVFSYRISSFHR 860


>SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3292

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -3

Query: 717  TPVNHYQIVVSNP*CRSISRGPGPW 643
            TP+ H Q V +NP C +IS  P PW
Sbjct: 2951 TPMVH-QWVRANPQCATISEAPPPW 2974


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,086,155
Number of Sequences: 59808
Number of extensions: 473458
Number of successful extensions: 1219
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1205
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2490695009
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)